Sphingobacterium sp. CZ-2

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium sp. CZ-2 is a rod-shaped bacterium characterized by its single replicon structure. This organism is classified within the genus Sphingobacterium, which is known for its diverse ecological roles and presence in various environments. The specific accessions for Sphingobacterium sp. CZ-2 are recorded as NZ_CP038159.1, indicating its sequenced genome is available for further study. The rod shape of Sphingobacterium sp. CZ-2 suggests that it may possess certain advantages in motility and nutrient uptake in its ecological niche. Rod-shaped bacteria often exhibit efficient surface-to-volume ratios, which can facilitate optimal growth conditions and resource utilization. The presence of a single replicon is noteworthy, as it may relate to the organism's genomic organization and replication mechanisms. This trait can influence the bacterium's adaptability and evolutionary potential in various environments. Overall, Sphingobacterium sp. CZ-2 exemplifies the diversity within the Sphingobacterium genus, which is often found in soil and aquatic environments. The ecological significance of this bacterium may relate to its role in biogeochemical cycles, particularly in the degradation of complex organic materials. Understanding its specific functions and interactions within its environment could provide insights into microbial ecology and its contributions to ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp. CZ-2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium sp. CZ-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium sp. CZ-2


Gene Summary

Adenine Count

1166989 bp

Thymine Count

1161887 bp

Guanine Count

798782 bp

Cytosine Count

798318 bp

Genome Length

3925976 bp

Protein-coding Genes

3398 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gamma carbonic anhydrase family proteinE3D81_RS00055Not AvailablePositive13513 - 1403118944.9
ig-like domain-containing domainE3D81_RS00060Not AvailableNegative14059 - 1561259592.3
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgE3D81_RS00065Not AvailableNegative15813 - 1767269465.5
abc-f family atp-binding cassette domain-containing proteinE3D81_RS00070Not AvailableNegative17727 - 1957470821.8
co2+/mg2+ efflux protein apagE3D81_RS00075Not AvailableNegative19678 - 2006414720.2
sam-dependent methyltransferaseE3D81_RS00080Not AvailablePositive20357 - 2107026598.4
hypothetical proteinE3D81_RS00085Not AvailablePositive21118 - 2160319314.6
nif3-like dinuclear metal center hexameric proteinE3D81_RS00090Not AvailablePositive21605 - 2270240485.6
tyrosine-type recombinase/integraseE3D81_RS00095Not AvailablePositive22820 - 2409150245.9
hypothetical proteinE3D81_RS00100Not AvailablePositive24509 - 2477510127.8

Displaying genes 11 – 20 of 3459 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

23 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da
BASm0001758(9Z,12Z)-octadecadienoateC18H31O2Chemical structure of (9Z,12Z)-octadecadienoateNot available
Average279.445Da
Monoisotopic279.2329538Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da
BASm0001842(5Z,8Z,11Z,14Z)-eicosatetraenoateC20H31O2Chemical structure of (5Z,8Z,11Z,14Z)-eicosatetraenoateNot available
Average303.467Da
Monoisotopic303.2329538Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 23 metabolites

Health Effects

No health effects information available for this bacterium.