Palleronia sediminis

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Palleronia

Description

Palleronia sediminis is a Gram-negative, rod-shaped bacterium. It is characterized by having a single replicon, which is significant for its genetic stability and replication processes. The organism has been cataloged under the accession number SNAA00000000.1, which provides a reference for researchers seeking to study its genetic makeup and biological properties. As a member of the microbial community, Palleronia sediminis contributes to the ecological balance of its environment. The Gram-negative classification indicates that it possesses a thin peptidoglycan layer and an outer membrane, typical of bacteria in this category, which may influence its interactions with other microorganisms and its environmental resilience. Understanding the traits of Palleronia sediminis, particularly its Gram-negative nature and rod shape, can provide insights into its metabolic capabilities and ecological roles. The presence of a single replicon suggests that this bacterium may have streamlined genetic processes, which could be advantageous in certain environmental conditions. This efficiency may allow it to thrive in specific niches, potentially interacting with other species in its habitat. Overall, the traits of Palleronia sediminis highlight its importance within microbial ecosystems and the potential roles it may play in biogeochemical cycles or environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPalleronia
SpeciesPalleronia sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Palleronia sediminis strain SS33 NODE_95_length_230_cov_37.449541,

Gene Summary

Adenine Count

540686 bp

Thymine Count

538070 bp

Guanine Count

1157581 bp

Cytosine Count

1160785 bp

Genome Length

3397122 bp

Protein-coding Genes

3236 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
penicillin-binding protein 2E2L08_04795Not AvailablePositive953058 - 95485164586.8
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseE2L08_04800Not AvailablePositive954866 - 95635051191.6
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseE2L08_04805Not AvailablePositive956347 - 95776548140.6
phospho-n-acetylmuramoyl-pentapeptide- transferaseE2L08_04810Not AvailablePositive957781 - 95886638735.1
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseE2L08_04815Not AvailablePositive958926 - 96032048381.6
aminoacetone oxidase family fad-binding enzymeE2L08_04820Not AvailableNegative960328 - 96152741817.0
cell division protein ftswE2L08_04825Not AvailablePositive961702 - 96286841208.4
udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseE2L08_04830Not AvailablePositive962975 - 96406937598.3
udp-n-acetylmuramate--l-alanine ligaseE2L08_04835Not AvailablePositive964119 - 96552849745.4
duf2484 family proteinE2L08_04840Not AvailablePositive965525 - 9657919340.89

Displaying genes 981 – 990 of 3349 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.