Palleronia sediminis

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Palleronia

Description

Palleronia sediminis is a Gram-negative, rod-shaped bacterium. It is characterized by having a single replicon, which is significant for its genetic stability and replication processes. The organism has been cataloged under the accession number SNAA00000000.1, which provides a reference for researchers seeking to study its genetic makeup and biological properties. As a member of the microbial community, Palleronia sediminis contributes to the ecological balance of its environment. The Gram-negative classification indicates that it possesses a thin peptidoglycan layer and an outer membrane, typical of bacteria in this category, which may influence its interactions with other microorganisms and its environmental resilience. Understanding the traits of Palleronia sediminis, particularly its Gram-negative nature and rod shape, can provide insights into its metabolic capabilities and ecological roles. The presence of a single replicon suggests that this bacterium may have streamlined genetic processes, which could be advantageous in certain environmental conditions. This efficiency may allow it to thrive in specific niches, potentially interacting with other species in its habitat. Overall, the traits of Palleronia sediminis highlight its importance within microbial ecosystems and the potential roles it may play in biogeochemical cycles or environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPalleronia
SpeciesPalleronia sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Palleronia sediminis strain SS33 NODE_95_length_230_cov_37.449541,

Gene Summary

Adenine Count

540686 bp

Thymine Count

538070 bp

Guanine Count

1157581 bp

Cytosine Count

1160785 bp

Genome Length

3397122 bp

Protein-coding Genes

3236 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-lysNot AvailableNot AvailablePositive2239407 - 2239482Not Available
diaminopimelate epimeraseE2L08_10975Not AvailablePositive2239576 - 224040929479.0
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtabE2L08_10980Not AvailablePositive2240406 - 224166245652.8
glutathione s-transferaseE2L08_10985Not AvailablePositive2241708 - 224230722223.6
ubiquinol-cytochrome c reductase iron-sulfur subunitE2L08_10990Not AvailablePositive2242490 - 224306520190.5
cytochrome bE2L08_10995Not AvailablePositive2243078 - 224442150473.1
cytochrome c1E2L08_11000Not AvailablePositive2244436 - 224524228971.3
atp-binding cassette domain-containing proteinE2L08_11005Not AvailableNegative2245299 - 224599124053.2
thiamine/thiamine pyrophosphate abc transporter permease thipE2L08_11010Not AvailableNegative2245984 - 224753152729.4
thiamine abc transporter substrate binding subunitE2L08_11015Not AvailableNegative2247507 - 224849335755.7

Displaying genes 2191 – 2200 of 3349 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.