Palleronia sediminis

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Palleronia

Description

Palleronia sediminis is a Gram-negative, rod-shaped bacterium. It is characterized by having a single replicon, which is significant for its genetic stability and replication processes. The organism has been cataloged under the accession number SNAA00000000.1, which provides a reference for researchers seeking to study its genetic makeup and biological properties. As a member of the microbial community, Palleronia sediminis contributes to the ecological balance of its environment. The Gram-negative classification indicates that it possesses a thin peptidoglycan layer and an outer membrane, typical of bacteria in this category, which may influence its interactions with other microorganisms and its environmental resilience. Understanding the traits of Palleronia sediminis, particularly its Gram-negative nature and rod shape, can provide insights into its metabolic capabilities and ecological roles. The presence of a single replicon suggests that this bacterium may have streamlined genetic processes, which could be advantageous in certain environmental conditions. This efficiency may allow it to thrive in specific niches, potentially interacting with other species in its habitat. Overall, the traits of Palleronia sediminis highlight its importance within microbial ecosystems and the potential roles it may play in biogeochemical cycles or environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPalleronia
SpeciesPalleronia sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Palleronia sediminis strain SS33 NODE_95_length_230_cov_37.449541,

Gene Summary

Adenine Count

540686 bp

Thymine Count

538070 bp

Guanine Count

1157581 bp

Cytosine Count

1160785 bp

Genome Length

3397122 bp

Protein-coding Genes

3236 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class c beta-lactamase-related serine hydrolaseE2L08_06950Not AvailableNegative1415935 - 141693035028.0
hypothetical proteinE2L08_06955Not AvailableNegative1417143 - 141808433662.4
nad(p)h-dependent oxidoreductaseE2L08_06965Not AvailableNegative1418894 - 141945419875.8
cupin domain-containing proteinE2L08_06975Not AvailableNegative1420475 - 142092716719.5
pca operon transcription factor pcaqE2L08_06980Not AvailableNegative1421016 - 142193332727.1
4-hydroxybenzoate 3-monooxygenaseE2L08_06985Not AvailablePositive1422029 - 142319844406.5
4-carboxymuconolactone decarboxylaseE2L08_06990Not AvailablePositive1423221 - 142359813519.2
protocatechuate 3,4-dioxygenase subunit betaE2L08_06995Not AvailablePositive1423595 - 142437428936.4
protocatechuate 3,4-dioxygenase subunit alphaE2L08_07000Not AvailablePositive1424374 - 142497622080.2
3-keto-5-aminohexanoate cleavage proteinE2L08_07005Not AvailablePositive1424986 - 142582830329.3

Displaying genes 1411 – 1420 of 3349 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.