Saccharopolyspora karakumensis

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Saccharopolyspora

Description

Saccharopolyspora karakumensis is a Gram-positive bacterium characterized by a single replicon. This organism is classified within the genus Saccharopolyspora, which is known for its role in various ecological niches, particularly in soil environments. The significance of Saccharopolyspora species often lies in their potential applications in biotechnology, including antibiotic production and bioremediation processes. The accession number for Saccharopolyspora karakumensis is SMLA00000000.1, which provides a reference point for genomic studies and comparative analysis with related species. As a member of the Actinobacteria phylum, this bacterium may contribute to the decomposition of organic materials and the cycling of nutrients in its habitat. From a biological perspective, the Gram-positive nature of Saccharopolyspora karakumensis suggests a thicker peptidoglycan layer in its cell wall, which can provide advantages in resisting environmental stresses. This trait is particularly important for survival in diverse and potentially harsh conditions. Overall, the characteristics of Saccharopolyspora karakumensis highlight its potential ecological roles, particularly in nutrient cycling and soil health, which are critical for maintaining ecosystem balance. Further research may elucidate its specific contributions to these processes and its potential applications in environmental and industrial microbiology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusSaccharopolyspora
SpeciesSaccharopolyspora karakumensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Saccharopolyspora karakumensis strain 5K548

Gene Summary

Adenine Count

1009023 bp

Thymine Count

1009596 bp

Guanine Count

2330188 bp

Cytosine Count

2321906 bp

Genome Length

6670713 bp

Protein-coding Genes

5983 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf721 domain-containing proteinE1202_22600Not AvailableNegative4805338 - 480592520879.8
dna replication/repair protein recfE1202_22605Not AvailableNegative4806017 - 480720442656.9
decarboxylating 6-phosphogluconate dehydrogenaseE1202_22610Not AvailableNegative4807437 - 480832431435.2
dna polymerase iii subunit betaE1202_22615Not AvailableNegative4808502 - 480962639761.7
peptide deformylaseE1202_22620Not AvailablePositive4810643 - 481118820131.9
methionyl-trna formyltransferaseE1202_22625Not AvailablePositive4811191 - 481211432355.6
rrna small subunit methyltransferase bE1202_22630Not AvailablePositive4812111 - 481352050311.9
nucleoside deaminaseE1202_22635Not AvailablePositive4813660 - 481411216297.0
osmc family peroxiredoxinE1202_22640Not AvailablePositive4814218 - 481462514553.0
amino acid permeaseE1202_22645Not AvailablePositive4814744 - 481612948704.5

Displaying genes 4381 – 4390 of 6041 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.