Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretory pathway avhb2 protein | EXZ48_24515 | Not Available | Positive | 5208086 - 5208385 | 10512.1 |
| type iv secretion system protein virb3 | EXZ48_24520 | Not Available | Positive | 5208390 - 5208731 | 12567.4 |
| virb4 family type iv secretion/conjugal transfer atpase | EXZ48_24525 | Not Available | Positive | 5208724 - 5211105 | 88517.6 |
| p-type dna transfer protein virb5 | EXZ48_24530 | Not Available | Positive | 5211105 - 5211803 | 25363.1 |
| hypothetical protein | EXZ48_24535 | Not Available | Positive | 5211800 - 5212024 | 8024.71 |
| conjugal transfer protein trbl | EXZ48_24540 | Not Available | Positive | 5212030 - 5212965 | 32972.4 |
| hypothetical protein | EXZ48_24545 | Not Available | Positive | 5212999 - 5213265 | 9634.39 |
| virb8 family protein | EXZ48_24550 | Not Available | Positive | 5213270 - 5213941 | 24676.1 |
| p-type conjugative transfer protein virb9 | EXZ48_24555 | Not Available | Positive | 5213938 - 5214792 | 31371.0 |
| trbi/virb10 family protein | EXZ48_24560 | Not Available | Positive | 5214806 - 5215978 | 42255.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
