Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pig-l family deacetylase | EXZ48_23940 | Not Available | Negative | 5098094 - 5098747 | 24454.5 |
| glucose-1-phosphate cytidylyltransferase | EXZ48_23945 | Not Available | Negative | 5098744 - 5099556 | 31211.8 |
| class i sam-dependent methyltransferase | EXZ48_23950 | Not Available | Negative | 5099553 - 5100848 | 48024.6 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | EXZ48_23955 | Not Available | Positive | 5101135 - 5101665 | 20017.7 |
| duf4910 domain-containing protein | EXZ48_23960 | Not Available | Negative | 5101657 - 5102988 | 48517.8 |
| sdr family oxidoreductase | EXZ48_23965 | Not Available | Negative | 5102998 - 5104068 | 38970.7 |
| glutamate-1-semialdehyde 2,1-aminomutase | EXZ48_23970 | Not Available | Negative | 5104195 - 5105538 | 48762.0 |
| response regulator transcription factor | EXZ48_23975 | Not Available | Negative | 5105635 - 5106294 | 24413.1 |
| gdp-l-fucose synthase | EXZ48_23980 | Not Available | Negative | 5106664 - 5107635 | 35874.3 |
| gdp-mannose 4,6-dehydratase | EXZ48_23985 | Not Available | Negative | 5107628 - 5108698 | 40421.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
