Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protocatechuate 3,4-dioxygenase subunit beta | EXZ48_20230 | Not Available | Negative | 4291692 - 4292441 | 27925.3 |
| 4-carboxymuconolactone decarboxylase | EXZ48_20235 | Not Available | Negative | 4292449 - 4292853 | 14621.3 |
| 3-oxoadipate enol-lactonase | EXZ48_20240 | Not Available | Negative | 4292846 - 4293658 | 29168.3 |
| pca operon transcription factor pcaq | EXZ48_20245 | Not Available | Positive | 4293754 - 4294677 | 32729.1 |
| aminoglycoside phosphotransferase family protein | EXZ48_20250 | Not Available | Positive | 4294766 - 4295632 | 31856.7 |
| 4-hydroxybenzoate 3-monooxygenase | EXZ48_20255 | Not Available | Negative | 4295626 - 4296798 | 43213.5 |
| helix-turn-helix domain-containing protein | EXZ48_20260 | Not Available | Positive | 4296914 - 4297798 | 32803.8 |
| sulfite oxidase-like oxidoreductase | EXZ48_20265 | Not Available | Negative | 4297783 - 4298433 | 25008.2 |
| iclr family transcriptional regulator | EXZ48_20270 | Not Available | Negative | 4298517 - 4299272 | 27043.0 |
| 3-oxoacid coa-transferase subunit a | EXZ48_20275 | Not Available | Positive | 4299536 - 4300243 | 24854.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
