Shinella sp. JR1-6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella sp. JR1-6 is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The strain is cataloged under the accession number SHMI00000000.1, which provides a reference point for genetic studies and further research. While specific ecological roles or biochemical capabilities of Shinella sp. JR1-6 are not detailed, the genus Shinella is generally known for its versatility in different ecological niches. This adaptability may be linked to the organism's capacity for survival and growth in diverse conditions, which is often a hallmark of microorganisms with simpler genomic structures. The presence of a single replicon could suggest a reduced metabolic burden compared to species with multiple replicons, allowing for efficient resource use and potentially rapid responses to environmental changes. This trait may enhance its ecological fitness, enabling it to thrive in competitive microbial communities. Shinella sp. JR1-6 represents a unique opportunity for studying microbial adaptability and genomic efficiency, providing insights into how single-replicon organisms navigate ecological challenges. Further research could elucidate its specific roles in microbial ecosystems and its interactions with other microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella sp. JR1-6
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella sp. JR1-6 NODE_135_length_596_cov_91.4277, whole genome

Gene Summary

Adenine Count

1276357 bp

Thymine Count

1306171 bp

Guanine Count

2269642 bp

Cytosine Count

2240299 bp

Genome Length

7093386 bp

Protein-coding Genes

6605 genes

Non-Coding Genes

160 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protocatechuate 3,4-dioxygenase subunit betaEXZ48_20230Not AvailableNegative4291692 - 429244127925.3
4-carboxymuconolactone decarboxylaseEXZ48_20235Not AvailableNegative4292449 - 429285314621.3
3-oxoadipate enol-lactonaseEXZ48_20240Not AvailableNegative4292846 - 429365829168.3
pca operon transcription factor pcaqEXZ48_20245Not AvailablePositive4293754 - 429467732729.1
aminoglycoside phosphotransferase family proteinEXZ48_20250Not AvailablePositive4294766 - 429563231856.7
4-hydroxybenzoate 3-monooxygenaseEXZ48_20255Not AvailableNegative4295626 - 429679843213.5
helix-turn-helix domain-containing proteinEXZ48_20260Not AvailablePositive4296914 - 429779832803.8
sulfite oxidase-like oxidoreductaseEXZ48_20265Not AvailableNegative4297783 - 429843325008.2
iclr family transcriptional regulatorEXZ48_20270Not AvailableNegative4298517 - 429927227043.0
3-oxoacid coa-transferase subunit aEXZ48_20275Not AvailablePositive4299536 - 430024324854.1

Displaying genes 4131 – 4140 of 6765 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.