Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | EXZ48_19875 | Not Available | Negative | 4219408 - 4220319 | 33693.8 |
| tricarboxylate transporter | EXZ48_19880 | Not Available | Positive | 4220495 - 4221595 | 39460.0 |
| tricarboxylate transporter | EXZ48_19885 | Not Available | Positive | 4221735 - 4223759 | 71071.1 |
| 4-oxalomesaconate tautomerase | EXZ48_19890 | Not Available | Positive | 4223853 - 4224959 | 38179.3 |
| isocitrate/isopropylmalate dehydrogenase family protein | EXZ48_19895 | Not Available | Positive | 4225013 - 4226071 | 37788.3 |
| rraa family protein | EXZ48_19900 | Not Available | Negative | 4226143 - 4226637 | 17579.9 |
| d-2-hydroxyacid dehydrogenase family protein | EXZ48_19905 | Not Available | Negative | 4226634 - 4227611 | 35240.6 |
| ldh family oxidoreductase | EXZ48_19910 | Not Available | Negative | 4227615 - 4228700 | 38017.9 |
| lysr family transcriptional regulator | EXZ48_19915 | Not Available | Negative | 4228819 - 4229715 | 32185.6 |
| abrb family transcriptional regulator | EXZ48_19920 | Not Available | Negative | 4230009 - 4231238 | 42412.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
