Shinella sp. JR1-6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella sp. JR1-6 is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The strain is cataloged under the accession number SHMI00000000.1, which provides a reference point for genetic studies and further research. While specific ecological roles or biochemical capabilities of Shinella sp. JR1-6 are not detailed, the genus Shinella is generally known for its versatility in different ecological niches. This adaptability may be linked to the organism's capacity for survival and growth in diverse conditions, which is often a hallmark of microorganisms with simpler genomic structures. The presence of a single replicon could suggest a reduced metabolic burden compared to species with multiple replicons, allowing for efficient resource use and potentially rapid responses to environmental changes. This trait may enhance its ecological fitness, enabling it to thrive in competitive microbial communities. Shinella sp. JR1-6 represents a unique opportunity for studying microbial adaptability and genomic efficiency, providing insights into how single-replicon organisms navigate ecological challenges. Further research could elucidate its specific roles in microbial ecosystems and its interactions with other microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella sp. JR1-6
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella sp. JR1-6 NODE_135_length_596_cov_91.4277, whole genome

Gene Summary

Adenine Count

1276357 bp

Thymine Count

1306171 bp

Guanine Count

2269642 bp

Cytosine Count

2240299 bp

Genome Length

7093386 bp

Protein-coding Genes

6605 genes

Non-Coding Genes

160 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinEXZ48_19115Not AvailableNegative4051744 - 405330656834.9
duf917 domain-containing proteinEXZ48_19120Not AvailableNegative4053343 - 405446739489.0
hydantoinase/oxoprolinase family proteinEXZ48_19125Not AvailableNegative4054464 - 405600852768.4
lrp/asnc family transcriptional regulatorEXZ48_19130Not AvailableNegative4056012 - 405652718516.5
5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferaseEXZ48_19140Not AvailablePositive4057549 - 405990086632.8
lysr family transcriptional regulator argpEXZ48_19145Not AvailableNegative4060059 - 406095532746.5
amino acid transporterEXZ48_19150Not AvailablePositive4061052 - 406166021402.6
dihydrodipicolinate synthase family proteinEXZ48_19155Not AvailablePositive4061683 - 406257931428.1
urea abc transporter atp-binding subunit urteEXZ48_19160Not AvailableNegative4062799 - 406349425292.8
urea abc transporter atp-binding protein urtdEXZ48_19165Not AvailableNegative4063850 - 406461427923.7

Displaying genes 3911 – 3920 of 6765 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.