Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | EXZ48_17235 | Not Available | Positive | 3668472 - 3669728 | 46196.8 |
| polyketide cyclase | EXZ48_17240 | Not Available | Positive | 3669808 - 3670290 | 18190.6 |
| llm class flavin-dependent oxidoreductase | EXZ48_17245 | Not Available | Positive | 3670422 - 3671483 | 38052.4 |
| type i methionyl aminopeptidase | EXZ48_17250 | Not Available | Positive | 3671529 - 3672281 | 26789.7 |
| peptide antibiotic transporter sbma | EXZ48_17255 | Not Available | Positive | 3672590 - 3673855 | 48412.8 |
| polysaccharide deacetylase | EXZ48_17260 | Not Available | Negative | 3673865 - 3674854 | 36271.9 |
| nnru family protein | EXZ48_17265 | Not Available | Positive | 3675018 - 3675602 | 20910.8 |
| tetratricopeptide repeat protein | EXZ48_17270 | Not Available | Positive | 3675704 - 3676375 | 24101.4 |
| ribosome biogenesis gtpase der | EXZ48_17275 | Not Available | Positive | 3676467 - 3677900 | 52769.2 |
| helix-turn-helix domain-containing protein | EXZ48_17280 | Not Available | Negative | 3677851 - 3678717 | 31636.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
