Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylose isomerase | EXZ48_17035 | Not Available | Negative | 3624558 - 3625370 | 28806.8 |
| laci family dna-binding transcriptional regulator | EXZ48_17040 | Not Available | Negative | 3625535 - 3626566 | 37572.4 |
| fatty acid desaturase | EXZ48_17045 | Not Available | Positive | 3626729 - 3627814 | 41036.9 |
| rieske family ferredoxin | EXZ48_17050 | Not Available | Positive | 3627840 - 3628154 | 11569.6 |
| ferredoxin reductase | EXZ48_17055 | Not Available | Positive | 3628207 - 3629430 | 42398.2 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | EXZ48_17060 | Not Available | Positive | 3629450 - 3630244 | 28364.1 |
| hypothetical protein | EXZ48_17065 | Not Available | Positive | 3630306 - 3630530 | 8502.3 |
| lysr family transcriptional regulator | EXZ48_17070 | Not Available | Negative | 3631158 - 3632165 | 36118.1 |
| sugar abc transporter substrate-binding protein | EXZ48_17075 | Not Available | Positive | 3632422 - 3633495 | 38210.4 |
| sugar abc transporter atp-binding protein | EXZ48_17080 | Not Available | Positive | 3633617 - 3635152 | 56590.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
