Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lps export abc transporter atp-binding protein | EXZ48_14195 | Not Available | Positive | 2995901 - 2996686 | 28694.7 |
| rna polymerase sigma-54 factor | EXZ48_14200 | Not Available | Positive | 2996839 - 2998404 | 57448.0 |
| ribosome-associated translation inhibitor raia | EXZ48_14205 | Not Available | Positive | 2998655 - 2999230 | 21184.8 |
| pts iia-like nitrogen-regulatory protein ptsn | EXZ48_14210 | Not Available | Positive | 2999303 - 2999767 | 16414.0 |
| nucleotide exchange factor grpe | EXZ48_14215 | Not Available | Negative | 2999841 - 3000452 | 21883.6 |
| heat-inducible transcriptional repressor hrca | EXZ48_14220 | Not Available | Negative | 3000545 - 3001627 | 39358.5 |
| ribonuclease ph | EXZ48_14225 | Not Available | Positive | 3001815 - 3002531 | 25839.0 |
| glyoxalase/bleomycin resistance/extradiol dioxygenase family protein | EXZ48_14230 | Not Available | Positive | 3002545 - 3002961 | 14813.7 |
| rdgb/ham1 family non-canonical purine ntp pyrophosphatase | EXZ48_14235 | Not Available | Positive | 3002970 - 3003614 | 23221.2 |
| coproporphyrinogen iii oxidase | EXZ48_14240 | Not Available | Positive | 3003654 - 3004814 | 43088.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
