Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter atp-binding protein | EXZ48_12930 | Not Available | Negative | 2730915 - 2732411 | 53693.1 |
| rhamnose abc transporter substrate-binding protein | EXZ48_12935 | Not Available | Negative | 2732629 - 2733618 | 34258.3 |
| deor/glpr transcriptional regulator | EXZ48_12940 | Not Available | Negative | 2733653 - 2734465 | 29809.1 |
| bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase | EXZ48_12945 | Not Available | Positive | 2734666 - 2736759 | 75629.3 |
| l-rhamnose catabolism isomerase | EXZ48_12950 | Not Available | Positive | 2736772 - 2738061 | 47045.6 |
| glsb/yeaq/ymge family stress response membrane protein | EXZ48_12955 | Not Available | Positive | 2738157 - 2738411 | 8387.94 |
| hydroxyacid dehydrogenase | EXZ48_12960 | Not Available | Negative | 2738468 - 2739499 | 37038.0 |
| hypothetical protein | EXZ48_12965 | Not Available | Negative | 2739554 - 2739832 | 10060.9 |
| ribonuclease d | EXZ48_12970 | Not Available | Positive | 2739944 - 2740570 | 23022.5 |
| duf817 domain-containing protein | EXZ48_12975 | Not Available | Positive | 2740614 - 2741450 | 32138.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
