Loktanella sp. IMCC34160

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Loktanella

Description

Loktanella sp. IMCC34160 is a bacterial strain characterized by having a single replicon. This trait indicates a streamlined genomic organization, which can be an advantage in various ecological niches. The strain is cataloged under the accession number SELP00000000.1, which provides a reference point for its genomic data. Understanding the characteristics of Loktanella sp. IMCC34160 can provide insights into its ecological roles, particularly in marine environments where members of the Loktanella genus are often found. These bacteria are typically associated with marine habitats and may play significant roles in nutrient cycling and organic matter degradation. The presence of a single replicon may suggest that Loktanella sp. IMCC34160 has optimized its genomic structure for efficiency, potentially allowing for rapid adaptation to changing environmental conditions. This adaptability can be crucial in marine ecosystems, where fluctuations in nutrient availability and other environmental factors occur frequently. Overall, the genomic simplicity of Loktanella sp. IMCC34160, as indicated by its single replicon, may enhance its ecological versatility, enabling it to thrive in diverse marine environments. Further research into its metabolic capabilities and ecological interactions could provide deeper insights into its role within marine microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusLoktanella
SpeciesLoktanella sp. IMCC34160
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Loktanella sp. IMCC34160 NODE_491_length_255_cov_169.187500, whole

Gene Summary

Adenine Count

695535 bp

Thymine Count

707226 bp

Guanine Count

1201239 bp

Cytosine Count

1172125 bp

Genome Length

3777745 bp

Protein-coding Genes

3597 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1150 domain-containing proteinEU803_11865Not AvailableNegative2407921 - 24081518309.93
hsp20 family proteinEU803_11870Not AvailableNegative2408148 - 240857015582.6
duf465 domain-containing proteinEU803_11875Not AvailablePositive2408733 - 24089518446.45
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseEU803_11880Not AvailableNegative2409003 - 240974926597.7
yebc/pmpr family dna-binding transcriptional regulatorEU803_11885Not AvailablePositive2409982 - 241073127031.5
leucine-rich repeat domain-containing proteinEU803_11890Not AvailablePositive2410849 - 241159527005.3
dmt family transporterEU803_11895Not AvailableNegative2411606 - 241251132016.3
amino acid transporterEU803_11900Not AvailableNegative2412552 - 241315721027.4
lysr family transcriptional regulator argpEU803_11905Not AvailablePositive2413253 - 241413131230.8
ribose-5-phosphate isomerase rpiaEU803_11910Not AvailablePositive2414213 - 241500128281.8

Displaying genes 2361 – 2370 of 3665 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.