Tropicimonas sp. IMCC6043

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tropicimonas

Description

Tropicimonas sp. IMCC6043 is a Gram-negative, rod-shaped bacterium characterized by its single replicon, which indicates a streamlined genomic structure. The organism is cataloged under the accession number SELO00000000.1, providing a reference for researchers interested in its genetic and phenotypic properties. The Gram-negative nature of Tropicimonas sp. IMCC6043 suggests that it possesses an outer membrane containing lipopolysaccharides, which can influence its interactions with other organisms and its environment. This structural feature often contributes to the bacterium's resilience against certain antibiotics and environmental stressors. Understanding the traits of Tropicimonas sp. IMCC6043 enhances our knowledge of microbial diversity and the ecological roles that such bacteria may play. Given its classification, it may be involved in nutrient cycling or other ecological functions within its habitat. The study of such microorganisms is crucial for unraveling their potential applications in biotechnology and their roles in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTropicimonas
SpeciesTropicimonas sp. IMCC6043
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tropicimonas sp. IMCC6043 NODE_711_length_201_cov_380.445946,

Gene Summary

Adenine Count

964083 bp

Thymine Count

957996 bp

Guanine Count

1764620 bp

Cytosine Count

1777785 bp

Genome Length

5487753 bp

Protein-coding Genes

5044 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cysteine hydrolaseEU800_00205Not AvailableNegative44638 - 4529124245.7
formyltetrahydrofolate deformylaseEU800_00210Not AvailableNegative45399 - 4628332722.5
rsmb/nop family class i sam-dependent rna methyltransferaseEU800_00215Not AvailablePositive46556 - 4772241183.3
response regulatorEU800_00220Not AvailablePositive47832 - 5016884559.3
recombinase recaEU800_00225Not AvailablePositive50417 - 5148137924.6
alanine--trna ligaseEU800_00230Not AvailablePositive51584 - 5424496046.3
duf1330 domain-containing proteinEU800_00235Not AvailablePositive54248 - 5453510588.5
translational gtpase typaEU800_00240Not AvailableNegative54546 - 5636666572.8
tyrosine--trna ligaseEU800_00245Not AvailableNegative56480 - 5773345750.9
anhydro-n-acetylmuramic acid kinaseEU800_00250Not AvailablePositive57803 - 5891838439.5

Displaying genes 61 – 70 of 5112 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

140 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da

Displaying 1–10 of 140 metabolites

Health Effects

No health effects information available for this bacterium.