Labedella phragmitis str. 11W25H-1

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Labedella

Description

Labedella phragmitis strain 11W25H-1 is a Gram-positive bacterium characterized by its rod-shaped morphology. This species possesses a single replicon, indicating a streamlined genetic structure, which may contribute to its adaptability in various environments. The genomic data for this strain is accessible under the accession number RZNB00000000.1. As a member of the Labedella genus, L. phragmitis is likely associated with specific ecological niches, particularly in environments rich in organic material, such as wetlands or marshes where Phragmites (common reed) is prevalent. The Gram-positive nature of this bacterium suggests that it may have a thick peptidoglycan layer, which provides structural support and may also play a role in its interactions with other microorganisms and the surrounding environment. Understanding the characteristics of Labedella phragmitis str. 11W25H-1 contributes to our knowledge of microbial diversity and its ecological roles, particularly in relation to plant-associated bacteria. This information could be valuable in exploring biotechnological applications, such as bioremediation or plant growth promotion, by leveraging the unique traits of this Gram-positive rod. Further research could elucidate its specific functions and interactions within its ecological niche.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusLabedella
SpeciesLabedella phragmitis
Strain11W25H-1

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Labedella phragmitis strain 11W25H-1 scaffold_17, whole genome

Gene Summary

Adenine Count

542348 bp

Thymine Count

545232 bp

Guanine Count

1216424 bp

Cytosine Count

1220304 bp

Genome Length

3525574 bp

Protein-coding Genes

3172 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase priaELQ90_13555Not AvailableNegative2878552 - 287929825802.4
imidazole glycerol phosphate synthase subunit hishELQ90_13560Not AvailableNegative2879349 - 287999022809.9
imidazoleglycerol-phosphate dehydratase hisbELQ90_13565Not AvailableNegative2879993 - 288060121665.8
histidinol-phosphate transaminaseELQ90_13570Not AvailableNegative2880598 - 288169839416.8
lysm peptidoglycan-binding domain-containing proteinELQ90_13575Not AvailableNegative2881814 - 288222414071.8
transcriptional repressor lexaELQ90_13580Not AvailablePositive2882545 - 288327626153.2
gtpase hflxELQ90_13585Not AvailableNegative2883296 - 288485256118.1
methyltransferase domain-containing proteinELQ90_13590Not AvailablePositive2884936 - 288552621273.5
diaminopimelate epimeraseELQ90_13595Not AvailableNegative2885562 - 288644330905.5
trna (adenosine(37)-n6)-dimethylallyltransferase miaaELQ90_13600Not AvailableNegative2886454 - 288740734563.3

Displaying genes 2671 – 2680 of 3241 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.