Labedella phragmitis str. 11W25H-1

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Labedella

Description

Labedella phragmitis strain 11W25H-1 is a Gram-positive bacterium characterized by its rod-shaped morphology. This species possesses a single replicon, indicating a streamlined genetic structure, which may contribute to its adaptability in various environments. The genomic data for this strain is accessible under the accession number RZNB00000000.1. As a member of the Labedella genus, L. phragmitis is likely associated with specific ecological niches, particularly in environments rich in organic material, such as wetlands or marshes where Phragmites (common reed) is prevalent. The Gram-positive nature of this bacterium suggests that it may have a thick peptidoglycan layer, which provides structural support and may also play a role in its interactions with other microorganisms and the surrounding environment. Understanding the characteristics of Labedella phragmitis str. 11W25H-1 contributes to our knowledge of microbial diversity and its ecological roles, particularly in relation to plant-associated bacteria. This information could be valuable in exploring biotechnological applications, such as bioremediation or plant growth promotion, by leveraging the unique traits of this Gram-positive rod. Further research could elucidate its specific functions and interactions within its ecological niche.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusLabedella
SpeciesLabedella phragmitis
Strain11W25H-1

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Labedella phragmitis strain 11W25H-1 scaffold_17, whole genome

Gene Summary

Adenine Count

542348 bp

Thymine Count

545232 bp

Guanine Count

1216424 bp

Cytosine Count

1220304 bp

Genome Length

3525574 bp

Protein-coding Genes

3172 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinELQ90_12580Not AvailableNegative2663118 - 26633607801.02
phospholipid carrier-dependent glycosyltransferaseELQ90_12585Not AvailableNegative2663543 - 266520461088.8
16s rrna (cytidine(1402)-2'-o)-methyltransferaseELQ90_12590Not AvailablePositive2665256 - 266608028810.5
methionine--trna ligaseELQ90_12595Not AvailablePositive2666156 - 266773658428.7
tatd family deoxyribonucleaseELQ90_12600Not AvailablePositive2667742 - 266863531671.8
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaELQ90_12605Not AvailablePositive2668628 - 266947630147.5
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseELQ90_12610Not AvailablePositive2669544 - 267047931900.8
abc transporter atp-binding proteinELQ90_12615Not AvailablePositive2670570 - 267238165673.9
methionine abc transporter substrate-binding proteinELQ90_12620Not AvailablePositive2672562 - 267347931751.4
atp-binding cassette domain-containing proteinELQ90_12625Not AvailablePositive2673570 - 267459837100.4

Displaying genes 2481 – 2490 of 3241 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.