Labedella phragmitis str. 11W25H-1

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Labedella

Description

Labedella phragmitis strain 11W25H-1 is a Gram-positive bacterium characterized by its rod-shaped morphology. This species possesses a single replicon, indicating a streamlined genetic structure, which may contribute to its adaptability in various environments. The genomic data for this strain is accessible under the accession number RZNB00000000.1. As a member of the Labedella genus, L. phragmitis is likely associated with specific ecological niches, particularly in environments rich in organic material, such as wetlands or marshes where Phragmites (common reed) is prevalent. The Gram-positive nature of this bacterium suggests that it may have a thick peptidoglycan layer, which provides structural support and may also play a role in its interactions with other microorganisms and the surrounding environment. Understanding the characteristics of Labedella phragmitis str. 11W25H-1 contributes to our knowledge of microbial diversity and its ecological roles, particularly in relation to plant-associated bacteria. This information could be valuable in exploring biotechnological applications, such as bioremediation or plant growth promotion, by leveraging the unique traits of this Gram-positive rod. Further research could elucidate its specific functions and interactions within its ecological niche.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusLabedella
SpeciesLabedella phragmitis
Strain11W25H-1

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Labedella phragmitis strain 11W25H-1 scaffold_17, whole genome

Gene Summary

Adenine Count

542348 bp

Thymine Count

545232 bp

Guanine Count

1216424 bp

Cytosine Count

1220304 bp

Genome Length

3525574 bp

Protein-coding Genes

3172 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aryldialkylphosphataseELQ90_10620Not AvailableNegative2237268 - 223820333157.5
xylulokinaseELQ90_10625Not AvailableNegative2238200 - 223969352778.6
sdr family oxidoreductaseELQ90_10630Not AvailableNegative2239713 - 224044425910.7
cupin domain-containing proteinELQ90_10635Not AvailablePositive2240575 - 224118322113.7
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolaseELQ90_10640Not AvailablePositive2241180 - 224183321956.3
shikimate dehydrogenaseELQ90_10645Not AvailablePositive2241830 - 224280735149.5
oxidoreductaseELQ90_10650Not AvailablePositive2242804 - 224373632212.6
murr/rpir family transcriptional regulatorELQ90_10655Not AvailablePositive2243760 - 224462930302.4
sugar abc transporter substrate-binding proteinELQ90_10660Not AvailableNegative2244695 - 224570234519.5
abc transporter permeaseELQ90_10665Not AvailableNegative2245744 - 224674534493.1

Displaying genes 2091 – 2100 of 3241 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.