Variovorax beijingensis

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax beijingensis is a rod-shaped bacterium characterized by its unique ecological and biological attributes. It possesses a single replicon, which is indicative of its genomic structure and can provide insights into its replication and genetic stability. The genomic data for this species is cataloged under the accession number RQXU00000000.1, facilitating further research and study. This bacterium is part of the larger Variovorax genus, which is known for its versatile metabolic capabilities. Members of this genus are often found in various environments, including soil and water, where they play significant roles in the biogeochemical cycling of nutrients. The adaptability of Variovorax beijingensis to different ecological niches suggests its potential utility in bioremediation processes, particularly in the degradation of pollutants. The rod shape of Variovorax beijingensis may contribute to its motility and ability to colonize diverse environments, enhancing its ecological role. Understanding the genetic and metabolic pathways of this organism could provide valuable insights into its interactions with other microorganisms and its contributions to ecosystem functioning. As research progresses, Variovorax beijingensis may emerge as a significant player in microbial ecology, with implications for environmental sustainability and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax beijingensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax beijingensis strain T529 113, whole genome shotgun

Gene Summary

Adenine Count

1091671 bp

Thymine Count

1091460 bp

Guanine Count

2256984 bp

Cytosine Count

2256643 bp

Genome Length

6704867 bp

Protein-coding Genes

6278 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorEH244_15030Not AvailableNegative1421920 - 142284934094.0
tripartite tricarboxylate transporter substrate binding protein bugeEH244_15035Not AvailablePositive1422963 - 142392833839.1
n-formylglutamate amidohydrolaseEH244_15040Not AvailablePositive1424026 - 142489832116.1
hypothetical proteinEH244_15045Not AvailablePositive1424999 - 14251785563.51
gamma-glutamyl-gamma-aminobutyrate hydrolase family proteinEH244_15050Not AvailableNegative1425201 - 142608832889.2
sugar phosphate isomerase/epimeraseEH244_15055Not AvailablePositive1426217 - 142727238932.8
hypothetical proteinEH244_15060Not AvailablePositive1427681 - 14279419340.22
translation initiation factor if-1EH244_15065Not AvailablePositive1428003 - 142827510190.3
atp-dependent rna helicase dbpaEH244_15070Not AvailablePositive1428364 - 142979451315.2
hypothetical proteinEH244_15075Not AvailablePositive1430157 - 143047711682.8

Displaying genes 1291 – 1300 of 4644 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

23 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001864Cr(6+)CrChemical structure of Cr(6+)Not available
Average51.9961Da
Monoisotopic51.9405119Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002198beta-D-ribofuranoseC5H10O5Chemical structure of beta-D-ribofuranose50-69-1
Average150.1299Da
Monoisotopic150.05282343Da
BASm0002727(1E)-4-oxobut-1-ene-1,2,4-tricarboxylateC7H3O7Chemical structure of (1E)-4-oxobut-1-ene-1,2,4-tricarboxylateNot available
Average199.096Da
Monoisotopic198.9895232Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm00031102-dehydro-3-deoxy-D-galactonateC6H10O6Chemical structure of 2-dehydro-3-deoxy-D-galactonateNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm00031792-hydroxy-4-oxobutane-1,2,4-tricarboxylateC7H5O8Chemical structure of 2-hydroxy-4-oxobutane-1,2,4-tricarboxylateNot available
Average217.111Da
Monoisotopic217.0000879Da

Displaying 1–10 of 23 metabolites

Health Effects

No health effects information available for this bacterium.