Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. MHTC-1 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
968631 bp
Thymine Count
969319 bp
Guanine Count
1978850 bp
Cytosine Count
1966842 bp
Genome Length
5892341 bp
Protein-coding Genes
5482 genes
Non-Coding Genes
49 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | EJI01_02505 | Not Available | Negative | 528396 - 528881 | 16723.2 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | EJI01_02510 | Not Available | Negative | 528878 - 529591 | 25151.6 |
| transcription-repair coupling factor | EJI01_02515 | Not Available | Positive | 529690 - 533175 | 129410.0 |
| phosphoserine phosphatase serb | EJI01_02520 | Not Available | Positive | 533172 - 533882 | 25230.8 |
| tripartite tricarboxylate transporter substrate binding protein | EJI01_02525 | Not Available | Positive | 534006 - 534977 | 33537.7 |
| tripartite tricarboxylate transporter tctb family protein | EJI01_02530 | Not Available | Positive | 534993 - 535460 | 16904.4 |
| c4-dicarboxylate abc transporter permease | EJI01_02535 | Not Available | Positive | 535473 - 536975 | 52626.1 |
| ldh family oxidoreductase | EJI01_02540 | Not Available | Positive | 536981 - 538045 | 37727.4 |
| plp-dependent aminotransferase family protein | EJI01_02545 | Not Available | Negative | 538059 - 539246 | 42070.1 |
| endonuclease iii | EJI01_02550 | Not Available | Positive | 539318 - 539956 | 23525.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
