Variovorax sp. MHTC-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. MHTC-1 is a rod-shaped bacterium characterized by having a single replicon. This trait indicates a streamlined genomic organization, which can be advantageous for efficiency in cellular processes such as replication and transcription. The organism is cataloged under the accession number RWKI00000000.1, which allows for its identification in genomic databases. The rod shape of Variovorax sp. MHTC-1 suggests that it may possess specific adaptations for movement and nutrient uptake in various environments, as this morphology is often associated with increased surface area relative to volume. This can facilitate interactions with substrates and enhance its capacity to colonize different ecological niches. Variovorax species are generally known for their metabolic versatility, which allows them to thrive in diverse environments, including soil and aquatic systems. While specific metabolic capabilities of Variovorax sp. MHTC-1 are not detailed in the provided traits, the genus is typically associated with the degradation of complex organic compounds, contributing to biogeochemical cycles. In summary, Variovorax sp. MHTC-1, with its rod shape and single replicon, exemplifies a bacterium that may be well-adapted for ecological resilience and nutrient cycling. Its presence in various environments highlights the ecological role such microorganisms play in maintaining environmental health and facilitating organic matter decomposition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. MHTC-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. MHTC-1 126, whole genome shotgun sequence.

Gene Summary

Adenine Count

968631 bp

Thymine Count

969319 bp

Guanine Count

1978850 bp

Cytosine Count

1966842 bp

Genome Length

5892341 bp

Protein-coding Genes

5482 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiamine pyrophosphate-dependent dehydrogenase e1 component subunit alphaEJI01_16340Not AvailableNegative3367293 - 336831234929.4
fis family transcriptional regulatorEJI01_16345Not AvailableNegative3368410 - 336959742892.4
pqq-dependent dehydrogenase, methanol/ethanol familyEJI01_16350Not AvailablePositive3369727 - 337183576099.0
d-xylose abc transporter substrate-binding proteinEJI01_16360Not AvailablePositive3372234 - 337326536260.8
abc transporter permeaseEJI01_16365Not AvailablePositive3373384 - 337455341025.6
sugar abc transporter atp-binding proteinEJI01_16370Not AvailablePositive3374553 - 337532928000.0
tripartite tricarboxylate transporter substrate binding protein bugdEJI01_16375Not AvailableNegative3375893 - 337686734157.6
nad-dependent succinate-semialdehyde dehydrogenaseEJI01_16380Not AvailablePositive3377028 - 337848851275.7
2-dehydropantoate 2-reductaseEJI01_16385Not AvailableNegative3378492 - 337941832905.7
chat domain-containing proteinEJI01_16390Not AvailablePositive3379618 - 338175076713.8

Displaying genes 3201 – 3210 of 5531 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.