Variovorax sp. MHTC-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. MHTC-1 is a rod-shaped bacterium characterized by having a single replicon. This trait indicates a streamlined genomic organization, which can be advantageous for efficiency in cellular processes such as replication and transcription. The organism is cataloged under the accession number RWKI00000000.1, which allows for its identification in genomic databases. The rod shape of Variovorax sp. MHTC-1 suggests that it may possess specific adaptations for movement and nutrient uptake in various environments, as this morphology is often associated with increased surface area relative to volume. This can facilitate interactions with substrates and enhance its capacity to colonize different ecological niches. Variovorax species are generally known for their metabolic versatility, which allows them to thrive in diverse environments, including soil and aquatic systems. While specific metabolic capabilities of Variovorax sp. MHTC-1 are not detailed in the provided traits, the genus is typically associated with the degradation of complex organic compounds, contributing to biogeochemical cycles. In summary, Variovorax sp. MHTC-1, with its rod shape and single replicon, exemplifies a bacterium that may be well-adapted for ecological resilience and nutrient cycling. Its presence in various environments highlights the ecological role such microorganisms play in maintaining environmental health and facilitating organic matter decomposition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. MHTC-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. MHTC-1 126, whole genome shotgun sequence.

Gene Summary

Adenine Count

968631 bp

Thymine Count

969319 bp

Guanine Count

1978850 bp

Cytosine Count

1966842 bp

Genome Length

5892341 bp

Protein-coding Genes

5482 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-carboxy-cis,cis-muconate cycloisomeraseEJI01_15320Not AvailablePositive3154688 - 315606449447.9
tripartite tricarboxylate transporter substrate binding protein bugdEJI01_15325Not AvailablePositive3156109 - 315708634229.5
class ii fumarate hydrataseEJI01_15330Not AvailablePositive3157092 - 315849249739.2
duf1646 domain-containing proteinEJI01_15335Not AvailableNegative3158482 - 315960339724.4
4-coumarate--coa ligaseEJI01_15340Not AvailableNegative3159581 - 316110754614.2
pilus assembly protein pilyEJI01_15345Not AvailableNegative3161260 - 3164571116093.0
pilus assembly proteinEJI01_15350Not AvailableNegative3164591 - 316514218603.1
pilus assembly protein pilwEJI01_15355Not AvailableNegative3165139 - 316619737214.7
type iv pilus modification protein pilvEJI01_15360Not AvailableNegative3166206 - 316677819528.5
prepilin-type n-terminal cleavage/methylation domain-containing proteinEJI01_15365Not AvailableNegative3166803 - 316728517228.8

Displaying genes 3001 – 3010 of 5531 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.