Variovorax sp. MHTC-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. MHTC-1 is a rod-shaped bacterium characterized by having a single replicon. This trait indicates a streamlined genomic organization, which can be advantageous for efficiency in cellular processes such as replication and transcription. The organism is cataloged under the accession number RWKI00000000.1, which allows for its identification in genomic databases. The rod shape of Variovorax sp. MHTC-1 suggests that it may possess specific adaptations for movement and nutrient uptake in various environments, as this morphology is often associated with increased surface area relative to volume. This can facilitate interactions with substrates and enhance its capacity to colonize different ecological niches. Variovorax species are generally known for their metabolic versatility, which allows them to thrive in diverse environments, including soil and aquatic systems. While specific metabolic capabilities of Variovorax sp. MHTC-1 are not detailed in the provided traits, the genus is typically associated with the degradation of complex organic compounds, contributing to biogeochemical cycles. In summary, Variovorax sp. MHTC-1, with its rod shape and single replicon, exemplifies a bacterium that may be well-adapted for ecological resilience and nutrient cycling. Its presence in various environments highlights the ecological role such microorganisms play in maintaining environmental health and facilitating organic matter decomposition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. MHTC-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. MHTC-1 126, whole genome shotgun sequence.

Gene Summary

Adenine Count

968631 bp

Thymine Count

969319 bp

Guanine Count

1978850 bp

Cytosine Count

1966842 bp

Genome Length

5892341 bp

Protein-coding Genes

5482 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-valNot AvailableNot AvailablePositive1533225 - 1533300Not Available
peptidyl-prolyl cis-trans isomeraseEJI01_07510Not AvailablePositive1533375 - 153528869415.0
Trna-hisNot AvailableNot AvailablePositive1535319 - 1535394Not Available
h-ns histone family proteinEJI01_07520Not AvailablePositive1535512 - 153585012283.6
nadph:quinone oxidoreductase family proteinEJI01_07525Not AvailableNegative1535914 - 153690034338.0
5'/3'-nucleotidase sureEJI01_07530Not AvailablePositive1537027 - 153779127220.3
protein-l-isoaspartate(d-aspartate) o-methyltransferaseEJI01_07535Not AvailablePositive1537793 - 153856627052.2
lysm peptidoglycan-binding domain-containing proteinEJI01_07540Not AvailablePositive1538578 - 153952532056.1
sigma-70 family rna polymerase sigma factorEJI01_07545Not AvailablePositive1539534 - 154057438369.7
23s rrna (uracil(1939)-c(5))-methyltransferase rlmdEJI01_07550Not AvailablePositive1540618 - 154205452605.5

Displaying genes 1471 – 1480 of 5531 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.