Variovorax sp. DXTD-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. DXTD-1 is a rod-shaped bacterium characterized by a single replicon. This single replicon indicates a streamlined genetic structure which may contribute to its adaptability in various environments. The accessions for this strain are cataloged under RWKH00000000.1, providing a reference for further research and characterization. The rod shape of Variovorax sp. DXTD-1 is typical of many members of the Variovorax genus, which are known for their metabolic versatility. This versatility often allows them to thrive in diverse ecological niches, potentially contributing to biogeochemical cycles. The single replicon could be advantageous, allowing for efficient replication and regulation of essential genes, which may enhance its survival and adaptability in fluctuating environmental conditions. In summary, Variovorax sp. DXTD-1, with its rod shape and single replicon, exemplifies traits that may facilitate its ecological roles, particularly in nutrient cycling and bioremediation processes. This adaptability underscores the importance of studying such microorganisms as they can play significant roles in maintaining ecosystem health and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. DXTD-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. DXTD-1 93, whole genome shotgun sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tripartite tricarboxylate transporter substrate binding proteinEJI00_16455Not AvailablePositive3456484 - 345746134612.3
azld domain-containing proteinEJI00_16460Not AvailableNegative3457479 - 345781712270.2
branched-chain amino acid abc transporter permeaseEJI00_16465Not AvailableNegative3457814 - 345855426758.3
methionyl-trna formyltransferaseEJI00_16470Not AvailableNegative3458554 - 345950733646.8
hypothetical proteinEJI00_16475Not AvailableNegative3459504 - 345999818457.9
peptide deformylaseEJI00_16480Not AvailableNegative3460000 - 346052119352.5
lysm domain-containing proteinEJI00_16485Not AvailablePositive3460683 - 346189744128.0
dna-protecting protein dpraEJI00_16490Not AvailablePositive3461928 - 346306739285.0
duf494 domain-containing proteinEJI00_16495Not AvailablePositive3463148 - 346366618923.5
duf1631 family proteinEJI00_16500Not AvailableNegative3463671 - 346605886069.1

Displaying genes 3231 – 3240 of 4906 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.