Variovorax sp. DXTD-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. DXTD-1 is a rod-shaped bacterium characterized by a single replicon. This single replicon indicates a streamlined genetic structure which may contribute to its adaptability in various environments. The accessions for this strain are cataloged under RWKH00000000.1, providing a reference for further research and characterization. The rod shape of Variovorax sp. DXTD-1 is typical of many members of the Variovorax genus, which are known for their metabolic versatility. This versatility often allows them to thrive in diverse ecological niches, potentially contributing to biogeochemical cycles. The single replicon could be advantageous, allowing for efficient replication and regulation of essential genes, which may enhance its survival and adaptability in fluctuating environmental conditions. In summary, Variovorax sp. DXTD-1, with its rod shape and single replicon, exemplifies traits that may facilitate its ecological roles, particularly in nutrient cycling and bioremediation processes. This adaptability underscores the importance of studying such microorganisms as they can play significant roles in maintaining ecosystem health and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. DXTD-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. DXTD-1 93, whole genome shotgun sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycerophosphodiester phosphodiesteraseEJI00_15340Not AvailableNegative3243892 - 324463826572.6
sn-glycerol-3-phosphate import atp-binding protein ugpcEJI00_15345Not AvailableNegative3244645 - 324565237001.0
sn-glycerol-3-phosphate abc transporter permease ugpeEJI00_15350Not AvailableNegative3245657 - 324650831315.2
sn-glycerol-3-phosphate abc transporter permease ugpaEJI00_15355Not AvailableNegative3246542 - 324742332617.2
sn-glycerol-3-phosphate abc transporter substrate-binding protein ugpbEJI00_15360Not AvailableNegative3247522 - 324883547715.7
phosphoglycerate dehydrogenaseEJI00_15365Not AvailablePositive3249062 - 325029443980.2
duf3683 domain-containing proteinEJI00_15370Not AvailablePositive3250383 - 3254261142563.0
hit family proteinEJI00_15375Not AvailablePositive3254264 - 325471316060.3
duf971 domain-containing proteinEJI00_15380Not AvailablePositive3254713 - 325512614775.4
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieEJI00_15385Not AvailablePositive3255281 - 325601226744.5

Displaying genes 3011 – 3020 of 4906 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.