Variovorax sp. DXTD-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. DXTD-1 is a rod-shaped bacterium characterized by a single replicon. This single replicon indicates a streamlined genetic structure which may contribute to its adaptability in various environments. The accessions for this strain are cataloged under RWKH00000000.1, providing a reference for further research and characterization. The rod shape of Variovorax sp. DXTD-1 is typical of many members of the Variovorax genus, which are known for their metabolic versatility. This versatility often allows them to thrive in diverse ecological niches, potentially contributing to biogeochemical cycles. The single replicon could be advantageous, allowing for efficient replication and regulation of essential genes, which may enhance its survival and adaptability in fluctuating environmental conditions. In summary, Variovorax sp. DXTD-1, with its rod shape and single replicon, exemplifies traits that may facilitate its ecological roles, particularly in nutrient cycling and bioremediation processes. This adaptability underscores the importance of studying such microorganisms as they can play significant roles in maintaining ecosystem health and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. DXTD-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. DXTD-1 93, whole genome shotgun sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinEJI00_14410Not AvailableNegative3028979 - 302996234748.7
acyl-coa dehydrogenaseEJI00_14415Not AvailableNegative3029959 - 303120343604.8
abc transporter substrate-binding proteinEJI00_14420Not AvailablePositive3031313 - 303231736117.9
llm class flavin-dependent oxidoreductaseEJI00_14425Not AvailablePositive3032353 - 303346241018.0
class ii aldolase/adducin family proteinEJI00_14430Not AvailablePositive3033466 - 303429030061.4
abc transporter substrate-binding proteinEJI00_14435Not AvailablePositive3034319 - 303529634313.3
symmetrical bis(5'-nucleosyl)-tetraphosphataseEJI00_14440Not AvailableNegative3035310 - 303615230018.1
hlyc/corc family transporterEJI00_14445Not AvailablePositive3036176 - 303748647041.1
duf1794 domain-containing proteinEJI00_14450Not AvailablePositive3037552 - 303820523982.4
autotransporter outer membrane beta-barrel domain-containing proteinEJI00_14455Not AvailableNegative3038218 - 303941241165.4

Displaying genes 2831 – 2840 of 4906 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.