Sphingomonas sp. TF3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. TF3 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This motile feature is significant for its adaptability in various environments. The organism has a single replicon, indicating a streamlined genetic structure which may contribute to its efficient replication and potential resilience in its ecological niche. The accession number for Sphingomonas sp. TF3 is RWKS00000000.1, which serves as a unique identifier for genetic and genomic studies. This accession provides a reference point for researchers interested in exploring the genetic makeup and potential applications of this bacterium. One ecological insight regarding Sphingomonas species is their known ability to degrade complex organic compounds, including pollutants. Thus, Sphingomonas sp. TF3 may play a role in bioremediation processes, contributing to the breakdown of environmental contaminants. This attribute highlights the significance of studying such microorganisms, as they could be harnessed for environmental clean-up efforts, further emphasizing the importance of understanding their biology and ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. TF3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. TF3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. TF3 92, whole genome shotgun sequence.

Gene Summary

Adenine Count

771033 bp

Thymine Count

780004 bp

Guanine Count

1425542 bp

Cytosine Count

1405637 bp

Genome Length

4388508 bp

Protein-coding Genes

4021 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-coumarate--coa ligaseEJC47_15220Not AvailablePositive3231498 - 323302454095.9
thioesterase family proteinEJC47_15225Not AvailablePositive3233021 - 323379727258.7
ef-hand domain-containing proteinEJC47_15230Not AvailablePositive3233935 - 323438115496.0
response regulatorEJC47_15235Not AvailablePositive3234470 - 323518926322.7
hamp domain-containing proteinEJC47_15240Not AvailablePositive3235203 - 323654948757.2
hypothetical proteinEJC47_15245Not AvailableNegative3236585 - 32367827023.62
nucleoside-diphosphate kinaseEJC47_15250Not AvailableNegative3237002 - 323745415840.9
abc transporter atp-binding proteinEJC47_15255Not AvailablePositive3237533 - 323939266679.2
Trna-leuNot AvailableNot AvailablePositive3239399 - 3239483Not Available
helix-turn-helix domain-containing proteinEJC47_15265Not AvailableNegative3239522 - 323996816150.5

Displaying genes 3011 – 3020 of 4107 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.