Sphingomonas sp. TF3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. TF3 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This motile feature is significant for its adaptability in various environments. The organism has a single replicon, indicating a streamlined genetic structure which may contribute to its efficient replication and potential resilience in its ecological niche. The accession number for Sphingomonas sp. TF3 is RWKS00000000.1, which serves as a unique identifier for genetic and genomic studies. This accession provides a reference point for researchers interested in exploring the genetic makeup and potential applications of this bacterium. One ecological insight regarding Sphingomonas species is their known ability to degrade complex organic compounds, including pollutants. Thus, Sphingomonas sp. TF3 may play a role in bioremediation processes, contributing to the breakdown of environmental contaminants. This attribute highlights the significance of studying such microorganisms, as they could be harnessed for environmental clean-up efforts, further emphasizing the importance of understanding their biology and ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. TF3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. TF3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. TF3 92, whole genome shotgun sequence.

Gene Summary

Adenine Count

771033 bp

Thymine Count

780004 bp

Guanine Count

1425542 bp

Cytosine Count

1405637 bp

Genome Length

4388508 bp

Protein-coding Genes

4021 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uroporphyrinogen-iii synthaseEJC47_14365Not AvailablePositive3045787 - 304647022758.3
hypothetical proteinEJC47_14370Not AvailablePositive3046598 - 304754832939.7
duf72 domain-containing proteinEJC47_14375Not AvailableNegative3047545 - 304834229115.7
xre family transcriptional regulatorEJC47_14380Not AvailableNegative3048500 - 304933630779.8
sdr family oxidoreductaseEJC47_14385Not AvailablePositive3049433 - 305032931655.7
glycoside hydrolase family 92 proteinEJC47_14390Not AvailableNegative3050452 - 305277383645.4
Trna-glyNot AvailableNot AvailablePositive3053062 - 3053136Not Available
co-chaperone ybbnEJC47_14400Not AvailablePositive3053337 - 305423332088.6
atp-dependent proteaseEJC47_14405Not AvailablePositive3054230 - 305486823428.2
hypothetical proteinEJC47_14410Not AvailablePositive3054880 - 30550776828.33

Displaying genes 2841 – 2850 of 4107 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.