Sphingomonas sp. TF3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. TF3 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This motile feature is significant for its adaptability in various environments. The organism has a single replicon, indicating a streamlined genetic structure which may contribute to its efficient replication and potential resilience in its ecological niche. The accession number for Sphingomonas sp. TF3 is RWKS00000000.1, which serves as a unique identifier for genetic and genomic studies. This accession provides a reference point for researchers interested in exploring the genetic makeup and potential applications of this bacterium. One ecological insight regarding Sphingomonas species is their known ability to degrade complex organic compounds, including pollutants. Thus, Sphingomonas sp. TF3 may play a role in bioremediation processes, contributing to the breakdown of environmental contaminants. This attribute highlights the significance of studying such microorganisms, as they could be harnessed for environmental clean-up efforts, further emphasizing the importance of understanding their biology and ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. TF3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. TF3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. TF3 92, whole genome shotgun sequence.

Gene Summary

Adenine Count

771033 bp

Thymine Count

780004 bp

Guanine Count

1425542 bp

Cytosine Count

1405637 bp

Genome Length

4388508 bp

Protein-coding Genes

4021 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flagellar hook assembly protein flgdEJC47_12745Not AvailablePositive2665036 - 266571322798.5
hypothetical proteinEJC47_12750Not AvailableNegative2665898 - 266623911859.1
mfs transporterEJC47_12755Not AvailableNegative2666460 - 266778546186.6
ubiquinol oxidase subunit iiEJC47_12760Not AvailablePositive2667931 - 266898937433.4
cytochrome o ubiquinol oxidase subunit iEJC47_12765Not AvailablePositive2668991 - 267101575052.9
cytochrome o ubiquinol oxidase subunit iiiEJC47_12770Not AvailablePositive2671012 - 267165323572.1
cytochrome o ubiquinol oxidase subunit ivEJC47_12775Not AvailablePositive2671650 - 267207214959.3
surf1 family proteinEJC47_12780Not AvailablePositive2672069 - 267276125023.4
hamp domain-containing histidine kinaseEJC47_12785Not AvailablePositive2672800 - 267403844188.3
response regulator transcription factorEJC47_12790Not AvailablePositive2674035 - 267457419316.1

Displaying genes 2521 – 2530 of 4107 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.