Sphingomonas sp. TF3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. TF3 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This motile feature is significant for its adaptability in various environments. The organism has a single replicon, indicating a streamlined genetic structure which may contribute to its efficient replication and potential resilience in its ecological niche. The accession number for Sphingomonas sp. TF3 is RWKS00000000.1, which serves as a unique identifier for genetic and genomic studies. This accession provides a reference point for researchers interested in exploring the genetic makeup and potential applications of this bacterium. One ecological insight regarding Sphingomonas species is their known ability to degrade complex organic compounds, including pollutants. Thus, Sphingomonas sp. TF3 may play a role in bioremediation processes, contributing to the breakdown of environmental contaminants. This attribute highlights the significance of studying such microorganisms, as they could be harnessed for environmental clean-up efforts, further emphasizing the importance of understanding their biology and ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. TF3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. TF3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. TF3 92, whole genome shotgun sequence.

Gene Summary

Adenine Count

771033 bp

Thymine Count

780004 bp

Guanine Count

1425542 bp

Cytosine Count

1405637 bp

Genome Length

4388508 bp

Protein-coding Genes

4021 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
multidrug efflux rnd transporter permease subunitEJC47_11485Not AvailablePositive2396369 - 2399545112828.0
tolc family proteinEJC47_11490Not AvailablePositive2399551 - 240101450677.6
coa ester lyaseEJC47_11495Not AvailablePositive2401014 - 240183528463.4
s-methyl-5'-thioadenosine phosphorylaseEJC47_11500Not AvailableNegative2401927 - 240279930944.2
hypothetical proteinEJC47_11505Not AvailableNegative2402796 - 240314912768.1
dna-3-methyladenine glycosylase 2 family proteinEJC47_11510Not AvailableNegative2403153 - 240377622408.7
2fe-2s iron-sulfur cluster binding domain-containing proteinEJC47_11515Not AvailablePositive2403850 - 240416711278.3
hypothetical proteinEJC47_11520Not AvailableNegative2404203 - 240493725961.6
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbEJC47_11525Not AvailableNegative2404997 - 240574026358.6
m20/m25/m40 family metallo-hydrolaseEJC47_11530Not AvailableNegative2405819 - 240758564108.6

Displaying genes 2271 – 2280 of 4107 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.