Sphingomonas sp. TF3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. TF3 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This motile feature is significant for its adaptability in various environments. The organism has a single replicon, indicating a streamlined genetic structure which may contribute to its efficient replication and potential resilience in its ecological niche. The accession number for Sphingomonas sp. TF3 is RWKS00000000.1, which serves as a unique identifier for genetic and genomic studies. This accession provides a reference point for researchers interested in exploring the genetic makeup and potential applications of this bacterium. One ecological insight regarding Sphingomonas species is their known ability to degrade complex organic compounds, including pollutants. Thus, Sphingomonas sp. TF3 may play a role in bioremediation processes, contributing to the breakdown of environmental contaminants. This attribute highlights the significance of studying such microorganisms, as they could be harnessed for environmental clean-up efforts, further emphasizing the importance of understanding their biology and ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. TF3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. TF3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. TF3 92, whole genome shotgun sequence.

Gene Summary

Adenine Count

771033 bp

Thymine Count

780004 bp

Guanine Count

1425542 bp

Cytosine Count

1405637 bp

Genome Length

4388508 bp

Protein-coding Genes

4021 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carbonic anhydraseEJC47_10410Not AvailableNegative2147780 - 214840922753.0
lipoyl synthaseEJC47_10415Not AvailablePositive2148475 - 214939233794.7
type ii toxin-antitoxin system rata family toxinEJC47_10420Not AvailablePositive2149392 - 214988918327.6
cina family proteinEJC47_10425Not AvailableNegative2149811 - 215035017957.3
bifunctional 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase/2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseEJC47_10430Not AvailableNegative2150353 - 215150439948.5
trna dihydrouridine synthase dusbEJC47_10435Not AvailablePositive2151605 - 215260936229.6
two-component sensor histidine kinaseEJC47_10440Not AvailablePositive2152585 - 215366738861.0
nitrogen regulation protein nr(i)EJC47_10445Not AvailablePositive2153664 - 215508251256.2
hamp domain-containing proteinEJC47_10450Not AvailablePositive2155217 - 215739779014.7
sigma-54-dependent fis family transcriptional regulatorEJC47_10455Not AvailablePositive2157402 - 215877550091.4

Displaying genes 2071 – 2080 of 4107 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.