Chitinophaga lutea

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga lutea is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, which is indicative of its genomic structure and may influence its replication and genetic stability. The organism is cataloged under the accession number RPDH00000000.1, which provides a reference for its genomic information in biological databases. As a member of the Chitinophaga genus, C. lutea is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of some fungi. This ecological role suggests that C. lutea may contribute to nutrient cycling in its environment, particularly in ecosystems where chitin-rich materials are abundant. By breaking down chitin, C. lutea may facilitate the recycling of organic matter and support soil health. The understanding of C. lutea's traits can provide insights into its potential applications in biotechnology, particularly in waste management or soil bioremediation, where the breakdown of chitinous materials is beneficial. Further research into its metabolic capabilities and environmental interactions could enhance our knowledge of its ecological significance and utility.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga lutea
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga lutea strain ZY74 NODE_4_length_5105_cov_78.716553,

Gene Summary

Adenine Count

1520955 bp

Thymine Count

1525811 bp

Guanine Count

1771701 bp

Cytosine Count

1791343 bp

Genome Length

6610013 bp

Protein-coding Genes

5299 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hopj type iii effector proteinEGT74_01140Not AvailablePositive300718 - 30105912911.2
Tmrna,resume consensus sequence (at 90): tttaattggcgaatctaaNot AvailableNot AvailablePositive301186 - 301555Not Available
rip metalloprotease rsepEGT74_01150Not AvailableNegative301580 - 30291750416.0
1-deoxy-d-xylulose-5-phosphate reductoisomeraseEGT74_01155Not AvailableNegative302951 - 30411442199.4
hypothetical proteinEGT74_01160Not AvailableNegative304222 - 30572156611.7
50s ribosomal protein l21EGT74_01165Not AvailablePositive306041 - 30634311210.8
50s ribosomal protein l27EGT74_01170Not AvailablePositive306379 - 3066579886.78
histoneEGT74_01175Not AvailablePositive306726 - 30708511733.2
dna polymerase/3'-5' exonuclease polxEGT74_01180Not AvailablePositive307923 - 30960862296.6
protease prswEGT74_01185Not AvailablePositive309608 - 31029425661.8

Displaying genes 281 – 290 of 5391 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.