Gordonia oryzae

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Gordoniaceae

Genus

Gordonia

Description

Gordonia oryzae is a notable bacterium characterized by the presence of flagella, which suggests motility in its natural environment. This motility may play a role in the bacterium's ability to navigate through various substrates or environments, potentially impacting its ecological interactions. The organism is defined by a single replicon, indicating a streamlined genome organization that may contribute to its adaptability and efficiency in various conditions. The genome of Gordonia oryzae is cataloged under the accession number RKMH00000000.1, which provides a reference point for researchers interested in studying its genetic makeup and related characteristics. Understanding the traits of Gordonia oryzae can provide insights into its ecological niche. The presence of flagella may facilitate its colonization in diverse habitats, particularly in environments where movement towards nutrients or away from harmful substances is beneficial. Additionally, the single replicon structure might suggest a capability for rapid growth and reproduction, which could be advantageous in fluctuating ecological conditions. In summary, Gordonia oryzae exemplifies important microbial traits such as motility and genomic simplicity that can influence its ecological role, potentially aiding in its survival and adaptation in various environments.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyGordoniaceae
GenusGordonia
SpeciesGordonia oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gordonia oryzae strain RS15-1S NODE_72_length_5517_cov_447.34,

Gene Summary

Adenine Count

765812 bp

Thymine Count

757691 bp

Guanine Count

1492484 bp

Cytosine Count

1503810 bp

Genome Length

4522147 bp

Protein-coding Genes

3794 genes

Non-Coding Genes

171 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
translation initiation factor if-1EF294_11015Not AvailableNegative2269695 - 22699168473.47
phage holin family proteinEF294_11020Not AvailablePositive2270230 - 227062514429.3
llm class f420-dependent oxidoreductaseEF294_11025Not AvailableNegative2270724 - 227157230466.9
duf1059 domain-containing proteinEF294_11030Not AvailablePositive2271672 - 22718245693.66
hypothetical proteinEF294_11040Not AvailableNegative2272499 - 227431966909.7
d-tyrosyl-trna(tyr) deacylaseEF294_11045Not AvailablePositive2274425 - 227488615779.8
formate dehydrogenase accessory sulfurtransferase fdhdEF294_11050Not AvailablePositive2274906 - 227574829377.3
sn-glycerol-3-phosphate abc transporter atp-binding protein ugpcEF294_11055Not AvailableNegative2275783 - 227684738007.9
abc transporter substrate-binding proteinEF294_11060Not AvailableNegative2276847 - 227815746616.7
carbohydrate abc transporter permeaseEF294_11065Not AvailableNegative2278238 - 227915834046.5

Displaying genes 2091 – 2100 of 3965 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.