Gordonia oryzae

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Gordoniaceae

Genus

Gordonia

Description

Gordonia oryzae is a notable bacterium characterized by the presence of flagella, which suggests motility in its natural environment. This motility may play a role in the bacterium's ability to navigate through various substrates or environments, potentially impacting its ecological interactions. The organism is defined by a single replicon, indicating a streamlined genome organization that may contribute to its adaptability and efficiency in various conditions. The genome of Gordonia oryzae is cataloged under the accession number RKMH00000000.1, which provides a reference point for researchers interested in studying its genetic makeup and related characteristics. Understanding the traits of Gordonia oryzae can provide insights into its ecological niche. The presence of flagella may facilitate its colonization in diverse habitats, particularly in environments where movement towards nutrients or away from harmful substances is beneficial. Additionally, the single replicon structure might suggest a capability for rapid growth and reproduction, which could be advantageous in fluctuating ecological conditions. In summary, Gordonia oryzae exemplifies important microbial traits such as motility and genomic simplicity that can influence its ecological role, potentially aiding in its survival and adaptation in various environments.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyGordoniaceae
GenusGordonia
SpeciesGordonia oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gordonia oryzae strain RS15-1S NODE_72_length_5517_cov_447.34,

Gene Summary

Adenine Count

765812 bp

Thymine Count

757691 bp

Guanine Count

1492484 bp

Cytosine Count

1503810 bp

Genome Length

4522147 bp

Protein-coding Genes

3794 genes

Non-Coding Genes

171 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tigr00730 family rossman fold proteinEF294_09960Not AvailableNegative2052974 - 205382230974.7
succinyl-diaminopimelate desuccinylaseEF294_09965Not AvailableNegative2053890 - 205498438458.4
electron transporterEF294_09970Not AvailableNegative2055056 - 205556217374.9
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseEF294_09975Not AvailablePositive2055991 - 205695633110.5
glyoxalaseEF294_09980Not AvailablePositive2057029 - 205743914412.0
arac family transcriptional regulatorEF294_09985Not AvailableNegative2057421 - 205811324463.2
succinyldiaminopimelate transaminaseEF294_09990Not AvailableNegative2058127 - 205924239075.5
ferredoxin family proteinEF294_09995Not AvailableNegative2059250 - 205958212099.0
cysteine dioxygenaseEF294_10000Not AvailablePositive2059940 - 206056922979.7
sulfurtransferaseEF294_10005Not AvailablePositive2060588 - 206096213252.9

Displaying genes 1891 – 1900 of 3965 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.