Phytobacter sp. MRY16-398

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Phytobacter

Description

Phytobacter sp. MRY16-398 is an aerobic bacterium characterized by its two replicons, which is notable for its genetic organization. The organism has been documented in the GenBank with the accession numbers NZ_AP018757.1 and NZ_AP018756.1, indicating its genetic information is accessible for research and study. Aerobic bacteria like Phytobacter sp. MRY16-398 require oxygen for their growth and metabolism, positioning them in ecosystems where oxygen is readily available. The presence of two replicons suggests a complex genomic structure, which may contribute to its adaptability and functionality in various environments. This trait can be significant for understanding how the organism interacts with its surroundings and other microorganisms. Biologically, the aerobic nature of Phytobacter sp. MRY16-398 highlights its potential role in nutrient cycling and organic matter decomposition in its habitat. Aerobic bacteria often contribute to the breakdown of organic materials, facilitating the release of nutrients back into the ecosystem. This process is essential for maintaining soil health and supporting plant growth, thereby playing a critical role in ecological balance. The genomic data associated with this species can help further elucidate its functions and interactions within its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusPhytobacter
SpeciesPhytobacter sp. MRY16-398
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Phytobacter sp. MRY16-398
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phytobacter sp. MRY16-398 chromosome, complete genome.

Gene Summary

Adenine Count

1388397 bp

Thymine Count

1390167 bp

Guanine Count

1570059 bp

Cytosine Count

1570545 bp

Genome Length

5919168 bp

Protein-coding Genes

5175 genes

Non-Coding Genes

605 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhMRY16398_RS20900Not AvailablePositive4242608 - 424307517371.1
peptidoglycan dd-transpeptidase mrdaMRY16398_RS20905Not AvailablePositive4243102 - 424500371012.6
peptidoglycan glycosyltransferase mrdbMRY16398_RS20910Not AvailablePositive4245006 - 424611840504.5
endolytic peptidoglycan transglycosylase rlpaMRY16398_RS20915Not AvailablePositive4246129 - 424727439617.6
d-alanyl-d-alanine carboxypeptidase dacaMRY16398_RS20925Not AvailablePositive4247413 - 424862444384.2
duf493 family protein ybedMRY16398_RS20930Not AvailablePositive4248727 - 42489909812.95
lipoyl(octanoyl) transferase lipbMRY16398_RS20935Not AvailablePositive4249079 - 424972023728.8
ybef family transcriptional regulatorMRY16398_RS20940Not AvailablePositive4250029 - 425098236007.6
lipoyl synthaseMRY16398_RS20945Not AvailablePositive4251192 - 425215735956.6
twin-arginine translocase subunit tateMRY16398_RS20950Not AvailableNegative4252232 - 42524357157.81

Displaying genes 4291 – 4300 of 6020 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.