Rahnella sp. JUb53

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Rahnella

Description

Rahnella sp. JUb53 is a Gram-negative bacterium characterized by its single replicon. This trait is significant as it suggests a relatively streamlined genetic architecture, which may influence its adaptability and replication efficiency. The strain is cataloged under the accession number SLYT00000000.1, providing a reference point for genetic and genomic studies. The Gram-negative classification indicates that Rahnella sp. JUb53 possesses an outer membrane that contains lipopolysaccharides, a feature that can contribute to its pathogenicity and resistance to certain antibiotics. This structural characteristic is typical of many bacteria within the same classification, potentially influencing their interactions with other microorganisms and their environments. Understanding the traits of Rahnella sp. JUb53 can provide insights into its ecological role. Gram-negative bacteria are often involved in nutrient cycling and can play critical roles in various ecosystems, including soil and aquatic environments. Their ability to interact with a diverse array of organisms, including plants and other microbes, suggests that Rahnella sp. JUb53 may contribute to microbial community dynamics and ecosystem functions. In summary, Rahnella sp. JUb53 is a Gram-negative bacterium with a single replicon, cataloged under SLYT00000000.1. Its structural properties may influence its ecological interactions, highlighting the importance of understanding such traits in the context of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusRahnella
SpeciesRahnella sp. JUb53
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rahnella sp. JUb53 Ga0304791_134, whole genome shotgun sequence.

Gene Summary

Adenine Count

1309988 bp

Thymine Count

1314480 bp

Guanine Count

1425702 bp

Cytosine Count

1413279 bp

Genome Length

5463546 bp

Protein-coding Genes

4785 genes

Non-Coding Genes

275 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-glucose:(heptosyl)lps alpha-1,3-glucosyltransferaseEC840_11464Not AvailablePositive5093183 - 509433143139.9
3-deoxy-d-manno-octulosonic-acid transferaseEC840_11465Not AvailablePositive5094452 - 509572647280.0
(heptosyl)lps beta-1,4-glucosyltransferaseEC840_11466Not AvailablePositive5095726 - 509649328903.3
phosphopantetheine adenylyltransferaseEC840_11467Not AvailablePositive5096500 - 509698217580.5
dna-(apurinic or apyrimidinic site) lyaseEC840_11468Not AvailableNegative5096991 - 509780030206.5
lsu ribosomal protein l33pEC840_11469Not AvailableNegative5097943 - 50981106357.91
lsu ribosomal protein l28pEC840_11470Not AvailableNegative5098122 - 50983588995.03
dna replication and repair protein radcEC840_11471Not AvailableNegative5098624 - 509930425769.7
phosphopantothenate-cysteine ligase /phosphopantothenoylcysteine decarboxylaseEC840_11472Not AvailablePositive5099490 - 510070743446.4
deoxyuridine 5'-triphosphate nucleotidohydrolaseEC840_11473Not AvailablePositive5100685 - 510114316192.6

Displaying genes 4691 – 4700 of 5060 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.