Rahnella sp. JUb53

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Rahnella

Description

Rahnella sp. JUb53 is a Gram-negative bacterium characterized by its single replicon. This trait is significant as it suggests a relatively streamlined genetic architecture, which may influence its adaptability and replication efficiency. The strain is cataloged under the accession number SLYT00000000.1, providing a reference point for genetic and genomic studies. The Gram-negative classification indicates that Rahnella sp. JUb53 possesses an outer membrane that contains lipopolysaccharides, a feature that can contribute to its pathogenicity and resistance to certain antibiotics. This structural characteristic is typical of many bacteria within the same classification, potentially influencing their interactions with other microorganisms and their environments. Understanding the traits of Rahnella sp. JUb53 can provide insights into its ecological role. Gram-negative bacteria are often involved in nutrient cycling and can play critical roles in various ecosystems, including soil and aquatic environments. Their ability to interact with a diverse array of organisms, including plants and other microbes, suggests that Rahnella sp. JUb53 may contribute to microbial community dynamics and ecosystem functions. In summary, Rahnella sp. JUb53 is a Gram-negative bacterium with a single replicon, cataloged under SLYT00000000.1. Its structural properties may influence its ecological interactions, highlighting the importance of understanding such traits in the context of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusRahnella
SpeciesRahnella sp. JUb53
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rahnella sp. JUb53 Ga0304791_134, whole genome shotgun sequence.

Gene Summary

Adenine Count

1309988 bp

Thymine Count

1314480 bp

Guanine Count

1425702 bp

Cytosine Count

1413279 bp

Genome Length

5463546 bp

Protein-coding Genes

4785 genes

Non-Coding Genes

275 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc ribbon proteinEC840_1106Not AvailableNegative4407730 - 44079518103.66
hypothetical proteinEC840_1107Not AvailableNegative4407964 - 440892033726.1
gtp-binding proteinEC840_1108Not AvailableNegative4408987 - 441047154841.7
beta-barrel assembly machine subunit bambEC840_1109Not AvailableNegative4410682 - 441186342317.2
putative negative regulator of rcsb-dependent stress responseEC840_11010Not AvailableNegative4411875 - 441249522444.5
histidyl-trna synthetaseEC840_11011Not AvailableNegative4412509 - 441378347302.4
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseEC840_11012Not AvailableNegative4414045 - 441516640753.4
cytoskeleton protein rodzEC840_11013Not AvailableNegative4415209 - 441620735158.4
type iv pilus assembly protein pilfEC840_11014Not AvailableNegative4416197 - 441695827341.5
23s rrna m(2)a-2503 methyltransferaseEC840_11015Not AvailableNegative4417035 - 441823444189.4

Displaying genes 4061 – 4070 of 5060 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.