Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium polonicum |
| Strain | DPMP315 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1183953 bp
Thymine Count
1172583 bp
Guanine Count
1223939 bp
Cytosine Count
1256503 bp
Genome Length
4842350 bp
Protein-coding Genes
4241 genes
Non-Coding Genes
192 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion protein | EDI29_03710 | Not Available | Positive | 816488 - 816925 | 17200.2 |
| type iii secretion protein | EDI29_03715 | Not Available | Positive | 816922 - 817443 | 19659.9 |
| yscq/hrcq family type iii secretion apparatus protein | EDI29_03720 | Not Available | Positive | 817440 - 818606 | 42686.8 |
| escr/yscr/hrcr family type iii secretion system export apparatus protein | EDI29_03725 | Not Available | Positive | 818603 - 819256 | 24020.5 |
| escs/yscs/hrcs family type iii secretion system export apparatus protein | EDI29_03730 | Not Available | Positive | 819264 - 819524 | 9224.0 |
| esct/ysct/hrct family type iii secretion system export apparatus protein | EDI29_03735 | Not Available | Positive | 819531 - 820331 | 29340.5 |
| escu/yscu/hrcu family type iii secretion system export apparatus switch protein | EDI29_03740 | Not Available | Positive | 820345 - 821424 | 40543.8 |
| lysr family transcriptional regulator | EDI29_03745 | Not Available | Negative | 821446 - 822372 | 34333.8 |
| m20 peptidase family dipeptidase | EDI29_03750 | Not Available | Positive | 822515 - 823933 | 52123.7 |
| helix-turn-helix domain-containing protein | EDI29_03755 | Not Available | Negative | 824023 - 824343 | 11756.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
