Pectobacterium polonicum str. DPMP315

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium polonicum str. DPMP315 is a Gram-negative bacterium characterized by the presence of flagella, which suggests motility. This species has a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number RJTN00000000.1, providing a reference for further genomic studies and research. As a member of the Pectobacterium genus, P. polonicum is likely involved in plant-pathogenic interactions, particularly affecting crops and agricultural systems. This genus is known for its role in causing soft rot diseases in various plants, which can have significant impacts on food security and agricultural productivity. The motility provided by its flagella may enhance its ability to colonize plant tissues and respond to environmental cues, facilitating infection processes. The ecological insight derived from the traits of Pectobacterium polonicum str. DPMP315 underscores its potential role in agricultural ecosystems. Understanding the characteristics of this bacterium can inform strategies for managing plant diseases, emphasizing the need to monitor its presence in agricultural contexts. This knowledge is essential for developing sustainable practices to mitigate the impact of bacterial pathogens on crop yields.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium polonicum
StrainDPMP315

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium polonicum strain DPMP315 scaffold_71, whole genome

Gene Summary

Adenine Count

1183953 bp

Thymine Count

1172583 bp

Guanine Count

1223939 bp

Cytosine Count

1256503 bp

Genome Length

4842350 bp

Protein-coding Genes

4241 genes

Non-Coding Genes

192 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cdf family zinc transporter zitbEDI29_02095Not AvailableNegative467238 - 46820035488.2
3-deoxy-7-phosphoheptulonate synthase arogEDI29_02100Not AvailablePositive468495 - 46955038542.1
doxx family proteinEDI29_02105Not AvailableNegative469762 - 47015113510.9
fmn-dependent nadh-azoreductaseEDI29_02110Not AvailableNegative470183 - 47079721792.0
lysr family transcriptional regulatorEDI29_02115Not AvailableNegative470971 - 47188532508.4
2,3-diphosphoglycerate-dependent phosphoglycerate mutaseEDI29_02120Not AvailableNegative471998 - 47275028406.6
efflux rnd transporter permease subunitEDI29_02125Not AvailableNegative472888 - 476025114888.0
efflux rnd transporter periplasmic adaptor subunitEDI29_02130Not AvailableNegative476022 - 47751553992.6
tolc family proteinEDI29_02135Not AvailableNegative477512 - 47877146467.1
cation transporterEDI29_02140Not AvailableNegative478784 - 47913712878.6

Displaying genes 591 – 600 of 4436 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.