Pectobacterium polonicum str. DPMP315

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium polonicum str. DPMP315 is a Gram-negative bacterium characterized by the presence of flagella, which suggests motility. This species has a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number RJTN00000000.1, providing a reference for further genomic studies and research. As a member of the Pectobacterium genus, P. polonicum is likely involved in plant-pathogenic interactions, particularly affecting crops and agricultural systems. This genus is known for its role in causing soft rot diseases in various plants, which can have significant impacts on food security and agricultural productivity. The motility provided by its flagella may enhance its ability to colonize plant tissues and respond to environmental cues, facilitating infection processes. The ecological insight derived from the traits of Pectobacterium polonicum str. DPMP315 underscores its potential role in agricultural ecosystems. Understanding the characteristics of this bacterium can inform strategies for managing plant diseases, emphasizing the need to monitor its presence in agricultural contexts. This knowledge is essential for developing sustainable practices to mitigate the impact of bacterial pathogens on crop yields.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium polonicum
StrainDPMP315

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium polonicum strain DPMP315 scaffold_71, whole genome

Gene Summary

Adenine Count

1183953 bp

Thymine Count

1172583 bp

Guanine Count

1223939 bp

Cytosine Count

1256503 bp

Genome Length

4842350 bp

Protein-coding Genes

4241 genes

Non-Coding Genes

192 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferaseEDI29_01995Not AvailablePositive450369 - 45159544449.4
adp-forming succinate--coa ligase subunit betaEDI29_02000Not AvailablePositive451793 - 45295941199.7
succinate--coa ligase subunit alphaEDI29_02005Not AvailablePositive452959 - 45383129766.2
cytochrome bd-i ubiquinol oxidase subunit cydaEDI29_02010Not AvailablePositive454561 - 45612958141.6
cytochrome d ubiquinol oxidase subunit iiEDI29_02015Not AvailablePositive456143 - 45728242154.4
cytochrome bd-i oxidase subunit cydxEDI29_02020Not AvailablePositive457299 - 4574154158.99
cyd operon protein ybgeEDI29_02025Not AvailablePositive457412 - 45770510959.8
acyl-coa thioesterase ybgcEDI29_02030Not AvailablePositive457839 - 45824315320.5
tol-pal system protein tolqEDI29_02035Not AvailablePositive458240 - 45892625445.0
colicin uptake protein tolrEDI29_02040Not AvailablePositive458939 - 45936415340.8

Displaying genes 571 – 580 of 4436 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.