Pectobacterium polonicum str. DPMP315

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium polonicum str. DPMP315 is a Gram-negative bacterium characterized by the presence of flagella, which suggests motility. This species has a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number RJTN00000000.1, providing a reference for further genomic studies and research. As a member of the Pectobacterium genus, P. polonicum is likely involved in plant-pathogenic interactions, particularly affecting crops and agricultural systems. This genus is known for its role in causing soft rot diseases in various plants, which can have significant impacts on food security and agricultural productivity. The motility provided by its flagella may enhance its ability to colonize plant tissues and respond to environmental cues, facilitating infection processes. The ecological insight derived from the traits of Pectobacterium polonicum str. DPMP315 underscores its potential role in agricultural ecosystems. Understanding the characteristics of this bacterium can inform strategies for managing plant diseases, emphasizing the need to monitor its presence in agricultural contexts. This knowledge is essential for developing sustainable practices to mitigate the impact of bacterial pathogens on crop yields.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium polonicum
StrainDPMP315

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium polonicum strain DPMP315 scaffold_71, whole genome

Gene Summary

Adenine Count

1183953 bp

Thymine Count

1172583 bp

Guanine Count

1223939 bp

Cytosine Count

1256503 bp

Genome Length

4842350 bp

Protein-coding Genes

4241 genes

Non-Coding Genes

192 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
piln family type ivb pilus formation outer membrane proteinEDI29_12325Not AvailablePositive2718259 - 271992359194.9
hypothetical proteinEDI29_12330Not AvailablePositive2719934 - 272123247161.1
type iv pilus biogenesis protein pilpEDI29_12335Not AvailablePositive2721229 - 272173818139.9
pilus assembly proteinEDI29_12340Not AvailablePositive2721738 - 272329757835.7
pilus assembly proteinEDI29_12345Not AvailablePositive2723300 - 272446643304.9
pilus assembly protein pilxEDI29_12350Not AvailablePositive2724523 - 272511920581.7
pilus assembly proteinEDI29_12355Not AvailablePositive2725125 - 272564319181.4
potassium transporter trkgEDI29_12360Not AvailablePositive2725640 - 272629324026.5
shufflon system plasmid conjugative transfer pilus tip adhesin pilvEDI29_12365Not AvailablePositive2726307 - 272790556449.2
tail fiber proteinEDI29_12375Not AvailableNegative2728183 - 272857214017.2

Displaying genes 2581 – 2590 of 4436 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.