Pectobacterium polonicum str. DPMP315

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium polonicum str. DPMP315 is a Gram-negative bacterium characterized by the presence of flagella, which suggests motility. This species has a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number RJTN00000000.1, providing a reference for further genomic studies and research. As a member of the Pectobacterium genus, P. polonicum is likely involved in plant-pathogenic interactions, particularly affecting crops and agricultural systems. This genus is known for its role in causing soft rot diseases in various plants, which can have significant impacts on food security and agricultural productivity. The motility provided by its flagella may enhance its ability to colonize plant tissues and respond to environmental cues, facilitating infection processes. The ecological insight derived from the traits of Pectobacterium polonicum str. DPMP315 underscores its potential role in agricultural ecosystems. Understanding the characteristics of this bacterium can inform strategies for managing plant diseases, emphasizing the need to monitor its presence in agricultural contexts. This knowledge is essential for developing sustainable practices to mitigate the impact of bacterial pathogens on crop yields.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium polonicum
StrainDPMP315

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium polonicum strain DPMP315 scaffold_71, whole genome

Gene Summary

Adenine Count

1183953 bp

Thymine Count

1172583 bp

Guanine Count

1223939 bp

Cytosine Count

1256503 bp

Genome Length

4842350 bp

Protein-coding Genes

4241 genes

Non-Coding Genes

192 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
heme utilization cystosolic carrier protein hutxEDI29_06305Not AvailableNegative1406756 - 140725618271.8
heme anaerobic degradation radical sam methyltransferase chuw/hutwEDI29_06310Not AvailableNegative1407271 - 140858449238.8
tonb-dependent receptorEDI29_06315Not AvailablePositive1408994 - 141117780451.5
hemin abc transporter substrate-binding proteinEDI29_06320Not AvailablePositive1411186 - 141200728813.8
abc-f family atpaseEDI29_06325Not AvailableNegative1412178 - 141377059787.3
phzf family phenazine biosynthesis proteinEDI29_06330Not AvailablePositive1413888 - 141478432225.5
gnat family n-acetyltransferaseEDI29_06335Not AvailablePositive1414799 - 141535921423.3
pts trehalose transporter subunit iibcEDI29_06340Not AvailablePositive1415934 - 141735251187.8
alpha,alpha-phosphotrehalaseEDI29_06345Not AvailablePositive1417418 - 141910365177.6
stress response protein elabEDI29_06350Not AvailableNegative1419281 - 141959211365.7

Displaying genes 1421 – 1430 of 4436 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.