Pectobacterium polonicum str. DPMP315

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium polonicum str. DPMP315 is a Gram-negative bacterium characterized by the presence of flagella, which suggests motility. This species has a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number RJTN00000000.1, providing a reference for further genomic studies and research. As a member of the Pectobacterium genus, P. polonicum is likely involved in plant-pathogenic interactions, particularly affecting crops and agricultural systems. This genus is known for its role in causing soft rot diseases in various plants, which can have significant impacts on food security and agricultural productivity. The motility provided by its flagella may enhance its ability to colonize plant tissues and respond to environmental cues, facilitating infection processes. The ecological insight derived from the traits of Pectobacterium polonicum str. DPMP315 underscores its potential role in agricultural ecosystems. Understanding the characteristics of this bacterium can inform strategies for managing plant diseases, emphasizing the need to monitor its presence in agricultural contexts. This knowledge is essential for developing sustainable practices to mitigate the impact of bacterial pathogens on crop yields.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium polonicum
StrainDPMP315

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium polonicum strain DPMP315 scaffold_71, whole genome

Gene Summary

Adenine Count

1183953 bp

Thymine Count

1172583 bp

Guanine Count

1223939 bp

Cytosine Count

1256503 bp

Genome Length

4842350 bp

Protein-coding Genes

4241 genes

Non-Coding Genes

192 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferaseEDI29_05250Not AvailableNegative1156794 - 115868665781.0
pyruvate dehydrogenase (acetyl-transferring), homodimeric typeEDI29_05255Not AvailableNegative1158701 - 116136499647.8
pyruvate dehydrogenase complex transcriptional repressor pdhrEDI29_05260Not AvailableNegative1161508 - 116227229131.0
amino acid permeaseEDI29_05265Not AvailablePositive1162932 - 116429048943.4
beta-lactamase regulator ampeEDI29_05270Not AvailableNegative1164374 - 116522831819.1
1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampdEDI29_05275Not AvailableNegative1165225 - 116580021496.2
nucleoside-specific channel-forming protein tsxEDI29_05280Not AvailablePositive1166218 - 116707832257.1
carboxylating nicotinate-nucleotide diphosphorylaseEDI29_05285Not AvailablePositive1167223 - 116811332158.4
prepilin peptidase-dependent pilinEDI29_05290Not AvailablePositive1168424 - 116887015728.9
type ii secretion system protein gspeEDI29_05295Not AvailablePositive1168873 - 117034553746.6

Displaying genes 1211 – 1220 of 4436 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.