Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium polonicum |
| Strain | DPMP315 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1183953 bp
Thymine Count
1172583 bp
Guanine Count
1223939 bp
Cytosine Count
1256503 bp
Genome Length
4842350 bp
Protein-coding Genes
4241 genes
Non-Coding Genes
192 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | EDI29_05100 | Not Available | Positive | 1120990 - 1121679 | 23925.1 |
| choline trimethylamine-lyase | EDI29_05105 | Not Available | Positive | 1122210 - 1124714 | 93017.1 |
| choline tma-lyase-activating enzyme | EDI29_05110 | Not Available | Positive | 1124806 - 1125756 | 35834.1 |
| qace family quaternary ammonium compound efflux smr transporter | EDI29_05115 | Not Available | Positive | 1125809 - 1126225 | 15151.7 |
| qace family quaternary ammonium compound efflux smr transporter | EDI29_05120 | Not Available | Positive | 1126243 - 1126569 | 11790.0 |
| ribokinase | EDI29_05125 | Not Available | Negative | 1126574 - 1127530 | 33704.4 |
| allose kinase | EDI29_05130 | Not Available | Negative | 1127527 - 1128420 | 32743.5 |
| ribulose-phosphate 3-epimerase | EDI29_05135 | Not Available | Negative | 1128417 - 1129109 | 25675.5 |
| abc transporter permease | EDI29_05140 | Not Available | Negative | 1129109 - 1130155 | 37173.4 |
| abc transporter permease | EDI29_05145 | Not Available | Negative | 1130173 - 1131162 | 35539.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
