Sphingomonas sp. JUb134

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. JUb134 is a rod-shaped bacterium characterized by the presence of flagella, which likely facilitates its motility. This organism has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various environments. The type strain is documented under the accession number SLYP00000000.2. The Sphingomonas genus is known for its ecological versatility and ability to degrade complex organic compounds, which suggests that Sphingomonas sp. JUb134 may play a role in bioremediation or nutrient cycling within its habitat. The presence of flagella implies a capability for movement toward favorable conditions or away from harmful ones, enhancing its survival prospects in dynamic environments. Understanding the specific traits of Sphingomonas sp. JUb134 provides insights into its potential ecological roles, particularly in relation to environmental bioremediation processes. The ability to adapt and thrive in different ecological niches may be critical for its survival and functional contributions to microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. JUb134
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. JUb134
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. JUb134 Ga0439394_04, whole genome shotgun

Gene Summary

Adenine Count

667231 bp

Thymine Count

668851 bp

Guanine Count

1389618 bp

Cytosine Count

1389862 bp

Genome Length

4115562 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oop family ompa-ompf porinEDF69_002449Not AvailablePositive2662496 - 266311321348.0
gaf domain-containing proteinEDF69_002450Not AvailableNegative2663121 - 266360917262.5
ribosome-associated proteinEDF69_002451Not AvailableNegative2663640 - 266406515524.8
trna pseudouridine32 synthase/23s rrna pseudouridine746 synthaseEDF69_002452Not AvailableNegative2664078 - 266472823038.7
d-alanyl-d-alanine carboxypeptidaseEDF69_002453Not AvailablePositive2664818 - 266570231045.9
nad(p)h dehydrogenase (quinone)EDF69_002454Not AvailableNegative2665737 - 266633921285.2
redox-sensitive bicupin yhak (pirin superfamily)EDF69_002455Not AvailableNegative2666455 - 266715325145.4
dna-binding transcriptional lysr family regulatorEDF69_002456Not AvailablePositive2667280 - 266818833025.7
putative purr-regulated permease permEDF69_002457Not AvailablePositive2668185 - 266921036137.4
two-component system cell cycle response regulator ctraEDF69_002458Not AvailablePositive2669345 - 267004626256.9

Displaying genes 2581 – 2590 of 3972 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.