Sphingomonas sp. JUb134

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. JUb134 is a rod-shaped bacterium characterized by the presence of flagella, which likely facilitates its motility. This organism has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various environments. The type strain is documented under the accession number SLYP00000000.2. The Sphingomonas genus is known for its ecological versatility and ability to degrade complex organic compounds, which suggests that Sphingomonas sp. JUb134 may play a role in bioremediation or nutrient cycling within its habitat. The presence of flagella implies a capability for movement toward favorable conditions or away from harmful ones, enhancing its survival prospects in dynamic environments. Understanding the specific traits of Sphingomonas sp. JUb134 provides insights into its potential ecological roles, particularly in relation to environmental bioremediation processes. The ability to adapt and thrive in different ecological niches may be critical for its survival and functional contributions to microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. JUb134
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. JUb134
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. JUb134 Ga0439394_04, whole genome shotgun

Gene Summary

Adenine Count

667231 bp

Thymine Count

668851 bp

Guanine Count

1389618 bp

Cytosine Count

1389862 bp

Genome Length

4115562 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diaminopimelate decarboxylaseEDF69_002429Not AvailableNegative2639849 - 264108741888.5
acyl-coa ligase (amp-forming) (exosortase a-associated)EDF69_002430Not AvailableNegative2641084 - 264260153501.0
acyl carrier proteinEDF69_002431Not AvailablePositive2642733 - 26430059598.38
hypothetical proteinEDF69_002432Not AvailablePositive2643002 - 264382328961.2
exosortase a-associated hydrolase 1EDF69_002433Not AvailablePositive2643808 - 264460228018.5
thioredoxin reductase (nadph)EDF69_002434Not AvailableNegative2644621 - 264558934433.9
peptidyl-prolyl cis-trans isomerase a (cyclophilin a)EDF69_002435Not AvailablePositive2645748 - 264635021373.8
hypothetical proteinEDF69_002436Not AvailablePositive2646457 - 264830165971.4
iron complex outermembrane receptor proteinEDF69_002437Not AvailablePositive2648468 - 265084385082.3
putative membrane protein yfcaEDF69_002438Not AvailablePositive2650986 - 265174726066.7

Displaying genes 2561 – 2570 of 3972 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.