Sphingomonas sp. JUb134

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. JUb134 is a rod-shaped bacterium characterized by the presence of flagella, which likely facilitates its motility. This organism has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various environments. The type strain is documented under the accession number SLYP00000000.2. The Sphingomonas genus is known for its ecological versatility and ability to degrade complex organic compounds, which suggests that Sphingomonas sp. JUb134 may play a role in bioremediation or nutrient cycling within its habitat. The presence of flagella implies a capability for movement toward favorable conditions or away from harmful ones, enhancing its survival prospects in dynamic environments. Understanding the specific traits of Sphingomonas sp. JUb134 provides insights into its potential ecological roles, particularly in relation to environmental bioremediation processes. The ability to adapt and thrive in different ecological niches may be critical for its survival and functional contributions to microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. JUb134
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. JUb134
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. JUb134 Ga0439394_04, whole genome shotgun

Gene Summary

Adenine Count

667231 bp

Thymine Count

668851 bp

Guanine Count

1389618 bp

Cytosine Count

1389862 bp

Genome Length

4115562 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5/6)EDF69_002044Not AvailablePositive2234703 - 223587241617.9
dtmp kinaseEDF69_002045Not AvailablePositive2235869 - 223649221901.1
dna polymerase-3 subunit delta'EDF69_002046Not AvailablePositive2236489 - 223749935463.7
methionyl-trna synthetaseEDF69_002047Not AvailablePositive2237509 - 223906557698.3
tatd dnase family proteinEDF69_002048Not AvailablePositive2239062 - 223984128668.8
phosphoribosyl 1,2-cyclic phosphate phosphodiesteraseEDF69_002049Not AvailablePositive2239838 - 224060228011.2
hypothetical proteinEDF69_002050Not AvailablePositive2240599 - 22408478468.4
atp diphosphataseEDF69_002051Not AvailablePositive2240899 - 224164527003.9
gtp-binding protein hflxEDF69_002052Not AvailableNegative2241663 - 224294947142.1
host factor-i proteinEDF69_002053Not AvailableNegative2242946 - 224343718012.9

Displaying genes 2171 – 2180 of 3972 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.