Sphingobacterium sp. JUb78

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium sp. JUb78 is characterized as a rod-shaped bacterium. It has a single replicon, which indicates that its genetic material is contained within one circular chromosome. This trait is significant in the context of microbial genetics, as it may influence the organism's replication and stability of its genome. The accession number for Sphingobacterium sp. JUb78 is SLYX00000000.1, which serves as a reference for its genomic data in biological databases. This accession allows researchers to access specific genomic information pertinent to this strain, facilitating studies that explore its biological functions and ecological roles. In terms of ecological insights, Sphingobacterium species are often found in various environments, including soil and aquatic systems, where they play a role in the degradation of organic matter. Their ability to break down complex substrates can contribute to nutrient cycling in ecosystems. Thus, understanding the traits of Sphingobacterium sp. JUb78 may provide valuable information regarding its potential applications in bioremediation or other ecological processes, highlighting the importance of such microorganisms in maintaining environmental health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp. JUb78
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium sp. JUb78
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium sp. JUb78 Ga0304819_122, whole genome shotgun

Gene Summary

Adenine Count

2007996 bp

Thymine Count

1965051 bp

Guanine Count

1097350 bp

Cytosine Count

1162608 bp

Genome Length

6233306 bp

Protein-coding Genes

5392 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative dna-binding transcriptional regulator yafyEDF67_101260Not AvailableNegative255688 - 25664737329.1
glutathione synthaseEDF67_101261Not AvailableNegative256816 - 25781437439.3
uncharacterized protein (tigr02421 family)EDF67_101262Not AvailableNegative257829 - 25966770501.2
n-formylglutamate amidohydrolaseEDF67_101263Not AvailableNegative259654 - 26043930106.8
putative mrna 3-end processing factorEDF67_101264Not AvailablePositive260566 - 26158237655.9
dna ligase-1EDF67_101265Not AvailablePositive261579 - 26317761064.1
atp-dependent lhr-like helicaseEDF67_101266Not AvailablePositive263174 - 26565494005.3
putative phosphoesteraseEDF67_101267Not AvailablePositive265656 - 26631825614.5
tonb-linked susc/raga family outer membrane proteinEDF67_101268Not AvailablePositive266671 - 269862119072.0
putative outer membrane starch-binding proteinEDF67_101269Not AvailablePositive269877 - 27177572839.2

Displaying genes 261 – 270 of 5469 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.