Sphingobacterium sp. JUb78

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium sp. JUb78 is characterized as a rod-shaped bacterium. It has a single replicon, which indicates that its genetic material is contained within one circular chromosome. This trait is significant in the context of microbial genetics, as it may influence the organism's replication and stability of its genome. The accession number for Sphingobacterium sp. JUb78 is SLYX00000000.1, which serves as a reference for its genomic data in biological databases. This accession allows researchers to access specific genomic information pertinent to this strain, facilitating studies that explore its biological functions and ecological roles. In terms of ecological insights, Sphingobacterium species are often found in various environments, including soil and aquatic systems, where they play a role in the degradation of organic matter. Their ability to break down complex substrates can contribute to nutrient cycling in ecosystems. Thus, understanding the traits of Sphingobacterium sp. JUb78 may provide valuable information regarding its potential applications in bioremediation or other ecological processes, highlighting the importance of such microorganisms in maintaining environmental health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp. JUb78
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium sp. JUb78
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium sp. JUb78 Ga0304819_122, whole genome shotgun

Gene Summary

Adenine Count

2007996 bp

Thymine Count

1965051 bp

Guanine Count

1097350 bp

Cytosine Count

1162608 bp

Genome Length

6233306 bp

Protein-coding Genes

5392 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lyttr family two component transcriptional regulatorEDF67_101250Not AvailablePositive242084 - 24284529113.3
hypothetical proteinEDF67_101251Not AvailablePositive243023 - 24405439040.1
rna polymerase sigma-70 factor (ecf subfamily)EDF67_101252Not AvailablePositive244209 - 24482624700.6
fecr family proteinEDF67_101253Not AvailablePositive244892 - 24586636934.0
tonb-linked susc/raga family outer membrane proteinEDF67_101254Not AvailablePositive245994 - 249641134048.0
susd-like starch-binding protein associating with outer membraneEDF67_101255Not AvailablePositive249655 - 25130761679.7
purple acid phosphatase-like proteinEDF67_101256Not AvailablePositive251314 - 25253446192.7
glycerophosphoryl diester phosphodiesteraseEDF67_101257Not AvailablePositive252536 - 25339632908.1
sulp family sulfate permeaseEDF67_101258Not AvailablePositive253556 - 25509455062.1
putative damage-inducible protein dinbEDF67_101259Not AvailablePositive255165 - 25563518338.9

Displaying genes 251 – 260 of 5469 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.